| line |
true |
false |
branch |
|
120
|
0 |
0 |
if (defined $sbjct->{'_n'} and $sbjct->{'_n'} == 1 or $sbjct->num_hsps == 1) { } |
|
155
|
0 |
0 |
unless defined $frame |
|
170
|
0 |
0 |
if (not defined $sbjct->{'_queryStart'}) { } |
|
176
|
0 |
0 |
$qstart < $sbjct->{'_queryStart'} ? : |
|
177
|
0 |
0 |
$qstop > $sbjct->{'_queryStop'} ? : |
|
178
|
0 |
0 |
$sstart < $sbjct->{'_sbjctStart'} ? : |
|
179
|
0 |
0 |
$sstop > $sbjct->{'_sbjctStop'} ? : |
|
237
|
0 |
0 |
if ($qoverlap) { } |
|
|
0 |
0 |
elsif ($soverlap) { } |
|
238
|
0 |
0 |
if ($soverlap) { } |
|
251
|
0 |
0 |
if ($prog eq 'TBLASTN') { } |
|
|
0 |
0 |
elsif ($prog eq 'BLASTX') { } |
|
|
0 |
0 |
elsif ($prog eq 'TBLASTX') { } |
|
296
|
0 |
0 |
unless $_->{'frame'} == $frame and $_->{'strand'} == $strand |
|
299
|
0 |
0 |
if ($start >= $_->{'start'} and $stop <= $_->{'stop'}) |
|
306
|
0 |
0 |
if ($start < $_->{'start'} and $stop > $_->{'start'} + $max_overlap) |
|
314
|
0 |
0 |
if ($@) { } |
|
324
|
0 |
0 |
if ($stop > $_->{'stop'} and $start < $_->{'stop'} - $max_overlap) |
|
332
|
0 |
0 |
if ($@) { } |
|
340
|
0 |
0 |
if ($overlap) |
|
347
|
0 |
0 |
unless ($overlap) |
|
382
|
0 |
0 |
if (defined $exp) { } |
|
|
0 |
0 |
elsif ($num == 0) { } |
|
|
0 |
0 |
elsif (not $num =~ /\./) { } |
|
383
|
0 |
0 |
unless $num |
|
384
|
0 |
0 |
if $num >= 5 |
|
385
|
0 |
0 |
if $num <= -5 |
|
392
|
0 |
0 |
if $num =~ /\.$/ |
|
395
|
0 |
0 |
unless ($num =~ /^0/) |
|
400
|
0 |
0 |
if $c == 0 |
|
403
|
0 |
0 |
if $num == 0 and not $rev |
|
404
|
0 |
0 |
if $rev |
|
435
|
0 |
0 |
unless ($from) |
|
436
|
0 |
0 |
if ($a[$i] == $a[$i - 1] + 1) { } |
|
440
|
0 |
0 |
if ($consec == 1) { } |
|
441
|
0 |
0 |
$consec > 1 ? : |
|
448
|
0 |
0 |
if (defined $to) |
|
449
|
0 |
0 |
if ($consec == 1) { } |
|
450
|
0 |
0 |
$consec > 1 ? : |
|
452
|
0 |
0 |
if $from |
|
504
|
0 |
0 |
unless ref $string_ref eq 'SCALAR' |
|
513
|
0 |
0 |
if $str =~ s/(\A|\n)]+> ?/>/sig |
|
516
|
0 |
0 |
if $str =~ s/<[^>]+>| //sig |
|
519
|
0 |
0 |
if $str =~ s/(\A|\n)>\s+/\n\n>/sig |