Bio/Restriction/Enzyme.pm | |||
---|---|---|---|
Criterion | Covered | Total | % |
condition | 36 | 62 | 58.0 |
line | !l | l&&!r | l&&r | condition |
---|---|---|---|---|
353 | 0 | 10163 | 0 | $name || $enzyme and $site || $recog || $seq |
377 | 7629 | 3 | 2531 | $cut and $cut <= length $site |
684 | 2533 | 410 | 5174 | not $self->{'_site'} =~ /\^/ and $value <= length $self->{'_site'} |
691 | 410 | 10 | 7697 | $self->{'_site'} =~ /\^/ and $self->type eq 'II' |
799 | 7530 | 177 | 0 | $self->{'_seq'}->seq =~ /N*[^N]+N{6,8}[^N]/ and abs $self->cut > 50 |
804 | 2417 | 5244 | 36 | length $self->string == 5 || length $self->string == 6 and not $self->palindromic |
7661 | 36 | 0 | length $self->string == 5 || length $self->string == 6 and not $self->palindromic and abs $self->cut > 20 | |
1067 | 26 | 519 | 0 | $self->{'_cut'} and $self->{'_rc_cut'} |
1127 | 0 | 5 | 0 | $self->{'_cut'} and $self->{'_rc_cut'} |
1131 | 0 | 0 | 0 | $self->{'_cut'} and $self->{'_rc_cut'} |
1194 | 0 | 0 | 1 | $self->overhang_seq eq $re->overhang_seq and $self->overhang eq $re->overhang |
line | l | !l | condition |
---|---|---|---|
363 | 457 | 9706 | $postcut ||= '' |
1301 | 2 | 0 | $self->{'_prototype'} || '' |
1432 | 2 | 0 | $self->{'_microbe'} || '' |
1454 | 7455 | 0 | $self->{'_source'} || '' |
line | l | !l&&r | !l&&!r | condition |
---|---|---|---|---|
353 | 10156 | 7 | 0 | $name || $enzyme |
10163 | 0 | 0 | $site || $recog || $seq | |
804 | 829 | 4451 | 2417 | length $self->string == 5 || length $self->string == 6 |
1139 | 0 | 0 | 5 | $self->{'_cut'} < 0 or $self->{'_rc_cut'} < 0 |
0 | 0 | 5 | $self->{'_cut'} < 0 or $self->{'_rc_cut'} < 0 or $self->{'_cut'} > $self->seq->length | |
0 | 0 | 5 | $self->{'_cut'} < 0 or $self->{'_rc_cut'} < 0 or $self->{'_cut'} > $self->seq->length or $self->{'_rc_cut'} > $self->seq->length | |
1191 | 0 | 0 | 1 | $self->overhang_seq =~ /N/ or $re->overhang_seq =~ /N/ |