| line |
!l |
l&&!r |
l&&r |
condition |
|
404
|
11336 |
1 |
0 |
$alphabet ne 'dna' and $alphabet ne 'rna' |
|
447
|
0 |
318 |
2 |
defined $start and ref $start |
|
|
318 |
0 |
2 |
defined $start and ref $start and $start->isa('Bio::LocationI') |
|
585
|
262 |
1 |
24 |
$args[0] and $args[0] =~ /^-[A-Z]+/i |
|
606
|
283 |
0 |
4 |
defined $terminator and $terminator ne '' |
|
607
|
286 |
0 |
1 |
defined $unknown and $unknown ne '' |
|
608
|
267 |
0 |
20 |
defined $frame and $frame ne '' |
|
609
|
267 |
0 |
20 |
defined $codonTableId and $codonTableId ne '' |
|
926
|
32 |
2 |
10 |
$first_only and $frame == $start_frame_order[0] |
| line |
l |
!l&&r |
!l&&!r |
condition |
|
375
|
0 |
0 |
11271 |
$self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq') |
|
465
|
7 |
0 |
313 |
$self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq') |
|
|
7 |
1 |
312 |
$self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq') or $self->isa('Bio::Seq::RichSeq') |
|
610
|
3 |
9 |
275 |
$complete_codons ||= $complete || 0 |
|
649
|
262 |
6 |
7 |
$frame == 0 or $frame == 1 |
|
|
268 |
7 |
0 |
$frame == 0 or $frame == 1 or $frame == 2 |
|
692
|
1 |
2 |
281 |
$self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq') |
|
737
|
0 |
0 |
1 |
$self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq') |
|
783
|
0 |
0 |
1 |
$self->isa('Bio::Seq::LargePrimarySeq') or $self->isa('Bio::Seq::LargeSeq') |
|
921
|
34 |
10 |
486 |
$codon_table->is_ter_codon($this_codon) or my $is_last_codon_in_frame = $j >= $seqlen - 5 |