| line |
true |
false |
branch |
|
235
|
40 |
0 |
defined $input{"l$aa"} ? : |
|
237
|
40 |
0 |
defined $input{"p$aa"} ? : |
|
248
|
0 |
2 |
defined $input{'correction'} ? : |
|
250
|
1 |
1 |
defined $input{'id'} ? : |
|
273
|
0 |
0 |
if (wantarray) { } |
|
300
|
0 |
38 |
if ($_ ne $len) |
|
342
|
0 |
1 |
unless ref $self |
|
348
|
1 |
0 |
if ($pos < $len) { } |
|
359
|
1 |
0 |
if (wantarray) { } |
|
385
|
0 |
2 |
if (@_) |
|
404
|
1 |
1 |
if (@_) |
|
423
|
0 |
0 |
if (@_) |
|
442
|
0 |
0 |
if (@_) |
|
461
|
0 |
3 |
if $thresh |
|
496
|
0 |
1 |
unless (@prob) |
|
503
|
1 |
7 |
if $next eq '10' |
|
545
|
0 |
1 |
unless grep {/$letter/;} @{$$self{'_alphabet'};} |
|
567
|
0 |
0 |
unless grep {/$letter/;} @{$$self{'_alphabet'};} |
|
586
|
0 |
0 |
if (@_) |
|
607
|
0 |
1 |
if (@_) |
|
617
|
1 |
7 |
if (scalar @letters == 0) { } |
|
625
|
0 |
1 |
if (wantarray) { } |
|
672
|
0 |
0 |
unless $array and $lm |
|
673
|
0 |
0 |
unless $direct |
|
674
|
0 |
0 |
$direct == 1 ? : |
|
676
|
0 |
0 |
if $c > $lm |
|
677
|
0 |
0 |
if $c < -$lm and $direct != 1 |
|
678
|
0 |
0 |
if $c < 0 and $direct == 1 |
|
680
|
0 |
0 |
if $direct != 1 |
|
704
|
0 |
0 |
unless $str and $lm |
|
705
|
0 |
0 |
unless $direct |
|
706
|
0 |
0 |
$direct == 1 ? : |
|
709
|
0 |
0 |
if $direct != 1 |
|
737
|
0 |
0 |
if ($base eq 'A') |
|
738
|
0 |
0 |
if defined $self->{'probA'} |
|
741
|
0 |
0 |
if ($base eq 'G') |
|
742
|
0 |
0 |
if defined $self->{'probG'} |
|
745
|
0 |
0 |
if ($base eq 'C') |
|
746
|
0 |
0 |
if defined $self->{'probC'} |
|
749
|
0 |
0 |
if ($base eq 'T') |
|
750
|
0 |
0 |
if defined $self->{'probT'} |
|
775
|
0 |
1 |
unless $self->{'logA'} |
|
779
|
0 |
1 |
unless length $seq == $self->width |
|
811
|
515 |
0 |
unless defined $thresh |
|
816
|
907 |
9393 |
if ($prob > $max_prob) |