| line |
true |
false |
branch |
|
154
|
546 |
8 |
if $location_type |
|
155
|
0 |
553 |
if $start_ext |
|
156
|
0 |
553 |
if $end_ext |
|
157
|
0 |
553 |
if $start_fuz |
|
158
|
0 |
553 |
if $end_fuz |
|
175
|
1100 |
5377 |
if (defined $value or not defined $self->{'_location_type'}) |
|
176
|
554 |
546 |
unless defined $value |
|
177
|
480 |
620 |
unless (defined $FUZZYCODES{$value}) |
|
179
|
415 |
65 |
if ($value =~ /\.\./) { } |
|
|
18 |
47 |
elsif ($value =~ /^\.$/) { } |
|
|
6 |
41 |
elsif ($value =~ /\^/) { } |
|
|
41 |
0 |
elsif ($value =~ /\?/) { } |
|
|
0 |
0 |
elsif ($value ne 'EXACT' and $value ne 'WITHIN' and $value ne 'IN-BETWEEN') { } |
|
185
|
1 |
3 |
if defined $self->start and defined $self->end and $self->end - 1 == $self->start |
|
237
|
555 |
2241 |
if (defined $value) |
|
244
|
1 |
4 |
if $self->location_type eq 'IN-BETWEEN' and defined $self->SUPER::end and $self->SUPER::end - 1 == $self->SUPER::start |
|
264
|
554 |
2199 |
if (defined $value) |
|
271
|
1 |
4 |
if $self->location_type eq 'IN-BETWEEN' and defined $self->SUPER::start and $self->SUPER::end - 1 == $self->SUPER::start |
|
292
|
555 |
3865 |
if (@args) |
|
311
|
555 |
2686 |
if (@args) |
|
330
|
0 |
767 |
if (defined $value and $value =~ /^\d+$/) |
|
331
|
0 |
0 |
if ($value == 0) { } |
|
334
|
0 |
0 |
unless (defined $v) |
|
342
|
609 |
158 |
if (defined $value) |
|
361
|
554 |
1879 |
if (@args) |
|
380
|
554 |
3420 |
if (@args) |
|
399
|
0 |
767 |
if (defined $value and $value =~ /^\d+$/) |
|
400
|
0 |
0 |
if ($value == 0) { } |
|
403
|
0 |
0 |
unless (defined $v) |
|
412
|
597 |
170 |
if (defined $value) |
|
482
|
11 |
102 |
if $self->location_type eq 'UNCERTAIN' |
|
490
|
114 |
112 |
if ($vals{$point . '_code'} ne 'EXACT' and $vals{$point . '_code'} ne 'UNCERTAIN') { } |
|
|
17 |
95 |
elsif ($vals{$point . '_code'} eq 'UNCERTAIN') { } |
|
494
|
0 |
87 |
if (not defined $vals{"min_$point"} && defined $vals{"max_$point"} and $vals{$point . '_code'} eq 'WITHIN' || $vals{$point . '_code'} eq 'BETWEEN') |
|
499
|
0 |
0 |
unless defined $vals{"min_$point"} |
|
500
|
0 |
0 |
unless defined $vals{"max_$point"} |
|
509
|
79 |
27 |
if (defined $vals{$point . '_code'} and $vals{$point . '_code'} eq 'BEFORE' || $vals{$point . '_code'} eq 'AFTER') |
|
517
|
27 |
79 |
if (defined $vals{$point . '_code'} and $vals{$point . '_code'} eq 'WITHIN' || $vals{$point . '_code'} eq 'BETWEEN') |
|
529
|
16 |
11 |
$point eq 'start' ? : |
|
535
|
5 |
12 |
if defined $vals{$point} |
|
542
|
5 |
108 |
if ($self->is_remote and $self->seq_id) |
|
545
|
9 |
104 |
if (defined $self->strand and $self->strand == -1 and $self->location_type ne 'UNCERTAIN') { } |
|
|
11 |
93 |
elsif ($self->location_type eq 'WITHIN') { } |
|
582
|
0 |
1109 |
unless defined $string |
|
586
|
1090 |
4545 |
if ($string =~ /^$pattern$/) |
|
587
|
1048 |
42 |
unless $1 eq '' and not defined $2 |
|
588
|
587 |
503 |
if ($FUZZYPOINTENCODE{$pattern} eq 'EXACT' or $FUZZYPOINTENCODE{$pattern} eq 'UNCERTAIN') { } |
|
593
|
221 |
282 |
if defined $max and length $max == 0 |
|
594
|
262 |
241 |
if defined $min and length $min == 0 |
|
599
|
0 |
19 |
if ($self->verbose >= 1) |