| Bio/LocatableSeq.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 46 | 60 | 76.6 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 196 | 757 | 0 | 2272 | $self->seq and $st != 0 |
| 281 | 3626 | 1 | 1 | $mapping[0] == 3 and $mapping[1] == 3 |
| 313 | 2698 | 0 | 11 | defined $self->{'_frameshifts'} && ref $self->{'_frameshifts'} eq 'HASH' |
| 347 | 2777 | 250 | 69 | $strand and $strand == -1 |
| 448 | 0 | 0 | 39 | $resnumber =~ /^\d+$/ and $resnumber > 0 |
| 451 | 0 | 1 | 38 | $resnumber >= $self->start and $resnumber <= $self->end |
| 541 | 0 | 0 | 78 | $column =~ /^\d+$/ and $column > 0 |
| 558 | 8 | 1 | 3 | $pos == 0 and $self->start == 1 |
| 628 | 54 | 2 | 8 | $self->strand and $self->strand == -1 |
| 659 | 8 | 4196 | 1 | length $seqstr > 0 and not $seqstr =~ /^([$Bio::LocatableSeq::MATCHPATTERN]+)$/ |
| line | l | !l | condition |
|---|---|---|---|
| 137 | 53 | 3568 | $mapping ||= [1, 1] |
| 199 | 2237 | 35 | $self->id || 'unknown' |
| 331 | 0 | 3097 | $char1 ||= '/' |
| 332 | 0 | 3097 | $char2 ||= '-' |
| 334 | 319 | 2778 | $self->strand || 0 |
| 338 | 0 | 6 | $id ||= '' |
| 339 | 5 | 1 | $st ||= 0 |
| 340 | 5 | 1 | $end ||= 0 |
| 457 | 13 | 25 | $self->strand || 0 |
| 553 | 78 | 0 | $self->start || 0 |
| 554 | 24 | 54 | $self->strand || 1 |
| 662 | 0 | 1 | defined $self->id || '[unidentified sequence]' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 281 | 1 | 0 | 3628 | grep {$_ != 3 if $_ != 1;} @mapping or $mapping[0] == 3 and $mapping[1] == 3 |
| 402 | 36 | 5 | 0 | $char ||= $Bio::LocatableSeq::GAP_SYMBOLS |