| line |
true |
false |
branch |
|
111
|
543 |
0 |
if ($self->strand == 1) { } |
|
134
|
822 |
0 |
if ($self->strand == 1) { } |
|
173
|
21 |
37 |
if (defined $unsecuremode and $unsecuremode eq 'unsecuremoderequested') { } |
|
175
|
5 |
16 |
unless ($start) |
|
178
|
13 |
8 |
if ($end) { } |
|
179
|
2 |
11 |
if ($end == $start) { } |
|
186
|
7 |
1 |
unless ($length) |
|
191
|
37 |
0 |
if ($start) |
|
192
|
0 |
37 |
unless ($self->{'seq'}->valid($start)) |
|
196
|
31 |
6 |
if ($end) |
|
197
|
0 |
31 |
if ($end == $start) { } |
|
201
|
0 |
31 |
unless ($self->{'seq'}->valid($end)) |
|
204
|
0 |
31 |
unless ($self->follows($start, $end) == 1) |
|
211
|
58 |
0 |
if ($self->strand == 1) { } |
|
269
|
0 |
0 |
if (defined $length) |
|
270
|
0 |
0 |
if ($length < 1) |
|
275
|
0 |
0 |
if (not defined $pos1) { } |
|
279
|
0 |
0 |
if ($pos1 == 0) |
|
283
|
0 |
0 |
if (defined $pos2 and $pos1 > $pos2) |
|
292
|
0 |
0 |
if ($startlabel < 1) |
|
296
|
0 |
0 |
if (not defined $pos2) { } |
|
298
|
0 |
0 |
unless (defined $length) |
|
302
|
0 |
0 |
if ($pos2 == 0) |
|
307
|
0 |
0 |
if (defined $pos1 and $pos1 > $pos2) |
|
316
|
0 |
0 |
if ($endlabel < 1) |
|
322
|
0 |
0 |
if ($strand == 1) { } |
|
346
|
216 |
0 |
if ($strand == 1) { } |
|
375
|
6 |
1 |
if (defined $value) |
|
400
|
6 |
6 |
if (defined $value) |
|
403
|
0 |
12 |
if (not exists $self->{'accession_number'}) { } |
|
430
|
0 |
0 |
if (defined $value) |
|
433
|
0 |
0 |
if (not exists $self->{'primary_id'}) { } |
|
478
|
0 |
0 |
unless ($position) |
|
483
|
0 |
0 |
unless ($label > 0) |
|
507
|
0 |
5 |
unless ($self->valid($label)) |
|
508
|
0 |
0 |
if ($self->{'seq'}->valid($label)) { } |
|
517
|
0 |
5 |
unless ($newseq) |
|
518
|
0 |
0 |
if (defined $length) { } |
|
519
|
0 |
0 |
unless ($length >= 0) |
|
530
|
5 |
0 |
if (defined $length) { } |
|
531
|
0 |
5 |
unless ($length >= 0) |
|
538
|
0 |
5 |
if ($length == 0) |
|
540
|
0 |
0 |
if ($insertbegin == -1) { } |
|
546
|
5 |
0 |
if ($newseqlength == $length) |
|
552
|
0 |
0 |
unless ($afterendlabel > 0) |
|
557
|
0 |
0 |
if ($deleted eq -1) { } |
|
561
|
0 |
0 |
if ($insertbegin == -1) { } |
|
578
|
0 |
0 |
if ($strand == 1) { } |
|
585
|
0 |
0 |
if ($insertbegin == 0 or $insertend == 0) { } |
|
600
|
0 |
0 |
unless ($endlabel > 0) |
|
607
|
0 |
0 |
if ($strand == 1) { } |
|
630
|
5 |
0 |
if ($length == 1) { } |
|
634
|
0 |
0 |
unless ($endlabel > 0) |
|
638
|
0 |
0 |
if ($length == 2) { } |
|
663
|
0 |
5 |
if ($strand == -1) |
|
672
|
0 |
5 |
if ($errorcheck != $length) { } |
|
697
|
68 |
108497 |
if ($label == $checkme) |
|
748
|
0 |
1882 |
if ($strand) |
|
749
|
0 |
0 |
if ($strand != 1 and $strand != -1) { } |
|
774
|
34 |
57 |
if (defined $value) |
|
775
|
5 |
29 |
if $value =~ /dna/i |
|
776
|
7 |
27 |
if $value =~ /rna/i |
|
777
|
0 |
34 |
unless ($valid_type{$value}) |
|
804
|
5 |
23 |
if ($label) |
|
805
|
5 |
0 |
if ($self->valid($label)) { } |
|
812
|
9 |
19 |
if ($coord_start) { } |
|
844
|
4 |
15 |
unless (defined $firstlabel) |
|
847
|
0 |
19 |
unless ($position) |
|
851
|
19 |
0 |
unless (defined $strand) |
|
854
|
19 |
0 |
if ($strand == 1) { } |
|
855
|
9 |
10 |
if ($position > 0) { } |
|
861
|
0 |
0 |
if ($position > 0) { } |
|
891
|
5 |
0 |
unless (defined $strand) |
|
894
|
5 |
0 |
unless (defined $firstlabel) |
|
897
|
0 |
5 |
unless ($self->valid($label)) |
|
901
|
0 |
5 |
if ($firstlabel == $label) |
|
908
|
0 |
5 |
if ($position <= 0) |
|
911
|
0 |
5 |
if ($strand == -1) { } |
|
943
|
37 |
92 |
unless (defined $strand) |
|
946
|
129 |
0 |
if ($strand == 1) { } |
|
1059
|
33 |
41 |
if (defined $value) |
|
1062
|
0 |
74 |
if (not exists $self->{'gene'}) { } |
|
1082
|
0 |
1642 |
unless ($self->{'seq'}->valid($self->start) and $self->{'seq'}->valid($self->end)) |
|
1102
|
0 |
0 |
if (defined $value) |
|
1105
|
0 |
0 |
if (not exists $self->{'name'}) { } |
|
1126
|
23 |
3 |
if (defined $value) |
|
1129
|
0 |
26 |
if (not exists $self->{'desc'}) { } |
|
1150
|
6 |
1 |
if (defined $value) |
|
1153
|
0 |
7 |
if (not exists $self->{'source'}) { } |
|
1169
|
67 |
12975 |
if (index(ref $value, 'LiveSeq') != -1) { } |
|
|
12851 |
124 |
elsif (index(ref $value, 'ARRAY') != -1) { } |
|
|
0 |
124 |
elsif (index(ref $value, 'HASH') != -1) { } |