| Bio/AlignIO/maf.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| branch | 20 | 24 | 83.3 |
| line | true | false | branch |
|---|---|---|---|
| 125 | 2 | 2 | unless ($self->{'seen_header'}) |
| 127 | 0 | 2 | unless $line =~ /^##maf/ |
| 138 | 7 | 27 | if ($line =~ /^a\s/msx) { } |
| 17 | 10 | elsif ($line =~ /^s\s/msx) { } | |
| 140 | 3 | 4 | if ($seen_aline) |
| 155 | 0 | 4 | unless $aline |
| 158 | 3 | 1 | if $kvs |
| 172 | 1 | 0 | $strand eq '-' ? : |
| 16 | 1 | $strand eq '+' ? : | |
| 173 | 16 | 1 | $strand > 0 ? : |
| 16 | 1 | $strand > 0 ? : | |
| 183 | 4 | 0 | if $aln->num_sequences |