| Bio/AlignIO/Handler/GenericAlignHandler.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 19 | 38 | 50.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 128 | 0 | 0 | 0 | ref $coll and $coll->isa('Bio::AnnotationCollectionI') |
| 141 | 0 | 0 | 0 | ref $coll and $coll->isa('Bio::AnnotationCollectionI') |
| 162 | 1 | 0 | 8 | $$data{-'consensus_meta'} and not UNIVERSAL::isa($$data{-'consensus_meta'}, 'Bio::Seq::Meta') |
| 187 | 0 | 168 | 0 | defined $seq->{'NSE'} and exists $self->{'_features'} |
| 56 | 111 | 1 | defined $seq->{'NSE'} and exists $self->{'_features'} and exists $self->{'_features'}{$seq->{'NSE'}} | |
| 370 | 12 | 0 | 0 | scalar @rawdata == 3 and $rawdata[2] =~ /-/ |
| line | l | !l | condition |
|---|---|---|---|
| 103 | 175 | 8 | $data ||= {} |
| 155 | 9 | 0 | $$data{-'seq_class'} || 'Bio::LocatableSeq' |
| 337 | 166 | 8 | $self->get_params('-alphabet')->{'-alphabet'} || 'protein' |
| 375 | 12 | 0 | $chain || '' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 63 | 562 | 0 | 0 | $data->{'NAME'} || $self->throw('No name tag defined!') |
| 316 | 6 | 0 | 0 | $data->{'ACCESSION_NUMBER'} or $data->{'DISPLAY_ID'} |
| 345 | 0 | 113 | 59 | $data->{'ALPHABET'} eq 'dna' || $data->{'ALPHABET'} eq 'rna' |
| 350 | 59 | 0 | 113 | $new_acc || $1 |