| line |
true |
false |
branch |
|
119
|
2 |
153 |
unless $_ = $self->_readline |
|
131
|
2 |
151 |
if (s/^\s*\[([^\]]+)\]//) |
|
135
|
2 |
0 |
if ($match =~ /([-\d\.+]+)/) |
|
148
|
153 |
0 |
if (defined $tree) |
|
183
|
0 |
1076 |
if ($self->print_tree_count) |
|
190
|
0 |
1076 |
if (not defined $tree or ref($tree) =~ /ARRAY/i or not $tree->isa('Bio::Tree::TreeI')) |
|
201
|
1076 |
0 |
if $self->_flush_on_write and defined $self->_fh |
|
216
|
2425 |
3540 |
if (scalar @data >= 1) { } |
|
234
|
5 |
5960 |
if ($params->{'no_bootstrap_values'} != 1 and not $node->is_Leaf and defined $node->bootstrap and $params->{'bootstrap_style'} eq 'traditional' and $params->{'internal_node_id'} eq 'bootstrap') { } |
|
|
5960 |
0 |
elsif ($params->{'no_internal_node_labels'} != 1) { } |
|
242
|
5 |
0 |
if defined $bootstrap |
|
245
|
5643 |
317 |
if defined $id |
|
248
|
5965 |
0 |
if ($params->{'no_branch_lengths'} != 1) |
|
250
|
4840 |
1125 |
if defined $blen |
|
253
|
0 |
5965 |
if ($params->{'bootstrap_style'} eq 'molphy') |
|
255
|
0 |
0 |
if defined $bootstrap |
|
258
|
0 |
5965 |
if ($params->{'newline_each_node'} == 1) |
|
278
|
1215 |
1076 |
if @_ |
|
311
|
0 |
0 |
if (defined $val) |
|
313
|
0 |
0 |
if (not $val =~ /^nobranchlength|molphy|traditional/i) { } |
|
339
|
0 |
0 |
if @_ |