Subroutine Coverage
| Bio/Tools/Phylo/PAML/Result.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
45 |
50 |
90.0
|
| pod |
48 |
48 |
100.0
|
| line |
count |
pod |
subroutine |
|
143
|
1 |
n/a |
BEGIN |
|
146
|
1 |
n/a |
BEGIN |
|
183
|
20 |
Yes |
new |
|
363
|
0 |
Yes |
next_tree |
|
379
|
2 |
Yes |
get_trees |
|
395
|
0 |
Yes |
rewind_tree_iterator |
|
409
|
3 |
Yes |
add_tree |
|
430
|
10 |
Yes |
set_MLmatrix |
|
451
|
8 |
Yes |
get_MLmatrix |
|
468
|
16 |
Yes |
set_NGmatrix |
|
489
|
9 |
Yes |
get_NGmatrix |
|
506
|
80 |
Yes |
add_seq |
|
529
|
20 |
Yes |
reset_seqs |
|
545
|
5 |
Yes |
get_seqs |
|
562
|
14 |
Yes |
set_codon_pos_basefreq |
|
591
|
1 |
Yes |
get_codon_pos_basefreq |
|
607
|
24 |
Yes |
version |
|
624
|
20 |
Yes |
seqfile |
|
641
|
27 |
Yes |
model |
|
664
|
20 |
Yes |
patterns |
|
682
|
2 |
Yes |
set_AAFreqs |
|
708
|
6 |
Yes |
get_AAFreqs |
|
729
|
2 |
Yes |
set_NTFreqs |
|
755
|
1 |
Yes |
get_NTFreqs |
|
776
|
11 |
Yes |
add_stat |
|
794
|
8 |
Yes |
get_stat |
|
810
|
1 |
Yes |
get_stat_names |
|
826
|
2 |
Yes |
get_AADistMatrix |
|
842
|
2 |
Yes |
set_AADistMatrix |
|
864
|
1 |
Yes |
get_AAMLDistMatrix |
|
880
|
1 |
Yes |
set_AAMLDistMatrix |
|
902
|
9 |
Yes |
add_NSSite_result |
|
921
|
5 |
Yes |
get_NSSite_results |
|
937
|
8 |
Yes |
set_CodonFreqs |
|
955
|
0 |
Yes |
get_CodonFreqs |
|
976
|
1 |
Yes |
get_KappaMatrix |
|
992
|
2 |
Yes |
set_KappaMatrix |
|
1015
|
1 |
Yes |
get_AlphaMatrix |
|
1031
|
2 |
Yes |
set_AlphaMatrix |
|
1053
|
10 |
Yes |
set_input_parameter |
|
1070
|
0 |
Yes |
get_input_parameters |
|
1086
|
0 |
Yes |
reset_input_parameters |
|
1104
|
20 |
Yes |
add_rst_seq |
|
1127
|
20 |
Yes |
reset_rst_seqs |
|
1143
|
1 |
Yes |
get_rst_seqs |
|
1160
|
1 |
Yes |
add_rst_tree |
|
1182
|
20 |
Yes |
reset_rst_trees |
|
1198
|
1 |
Yes |
get_rst_trees |
|
1214
|
1 |
Yes |
set_rst_persite |
|
1232
|
1 |
Yes |
get_rst_persite |