| line |
true |
false |
branch |
|
149
|
0 |
3 |
if ($method and not $method =~ /genscan/i) |
|
203
|
3 |
6 |
unless $self->_predictions_parsed |
|
208
|
7 |
2 |
if ($gene) |
|
214
|
7 |
0 |
unless ($seqobj) |
|
218
|
6 |
1 |
if ($id and $seq) |
|
224
|
6 |
1 |
if ($seqobj) |
|
231
|
0 |
6 |
if (not $seqobj->display_id =~ /_predicted_\w+_$prednr\|/) { } |
|
237
|
6 |
0 |
if ($self->_has_cds) |
|
268
|
85 |
59 |
if (/^\s*(\d+)\.(\d+)/) |
|
272
|
7 |
78 |
unless (defined $gene) |
|
283
|
74 |
11 |
if ($is_exon) { } |
|
292
|
10 |
75 |
$flds[2] eq '+' ? : |
|
294
|
10 |
75 |
if ($predobj->strand == 1) { } |
|
303
|
74 |
11 |
if ($is_exon) { } |
|
|
6 |
5 |
elsif ($flds[1] eq 'PlyA') { } |
|
|
5 |
0 |
elsif ($flds[1] eq 'Prom') { } |
|
318
|
6 |
68 |
if ($predobj->strand == 1) { } |
|
322
|
6 |
0 |
if $cod_offset < 1 |
|
332
|
56 |
12 |
if $cod_offset >= 0 |
|
350
|
7 |
52 |
if (/^\s*$/ and defined $gene) |
|
357
|
3 |
49 |
if (/^(GENSCAN)\s+(\S+)/) |
|
362
|
3 |
46 |
if (/^Sequence\s+(\S+)\s*:/) |
|
367
|
3 |
43 |
if (/^Parameter matrix:\s+(\S+)/i) |
|
372
|
3 |
40 |
if (/^Predicted coding/) |
|
376
|
2 |
38 |
if (/^>/) |
|
398
|
2 |
7 |
unless exists $self->{'_preds'} and @{$self->{'_preds'};} |
|
415
|
0 |
7 |
unless (exists $self->{'_preds'}) |
|
434
|
3 |
9 |
if $val |
|
435
|
0 |
12 |
unless (exists $self->{'_preds_parsed'}) |
|
454
|
3 |
6 |
if $val |
|
455
|
0 |
9 |
unless (exists $self->{'_has_cds'}) |
|
479
|
12 |
1 |
if ($entry) |
|
483
|
0 |
2 |
unless $_ = $self->_readline |
|
490
|
12 |
0 |
if ($entry =~ /^(\S+)\n([^>]+)/) { } |