| line |
true |
false |
branch |
|
127
|
0 |
743 |
if ($set > 1) |
|
130
|
0 |
2 |
if ($exon and !ref($exon) || ref $exon ne 'ARRAY') |
|
133
|
0 |
0 |
if ($intron and !ref($intron) || ref $intron ne 'ARRAY') |
|
136
|
1 |
742 |
if ($set == 0) |
|
138
|
0 |
1 |
if ($self->type) |
|
144
|
349 |
394 |
if defined $gene |
|
145
|
391 |
352 |
if defined $transcript |
|
146
|
2 |
741 |
if defined $exon |
|
147
|
0 |
743 |
if defined $intron |
|
148
|
1 |
742 |
if defined $coding |
|
166
|
0 |
408 |
unless ref $pos |
|
167
|
0 |
408 |
unless $pos->isa('Bio::Map::PositionI') |
|
171
|
0 |
408 |
unless defined $raw |
|
176
|
0 |
408 |
unless defined $value |
|
179
|
408 |
0 |
if ($type =~ /gene|transcript|exon|intron|coding/) { } |
|
181
|
292 |
116 |
$type eq 'gene' ? : |
|
182
|
0 |
408 |
unless $map |
|
183
|
0 |
408 |
unless $map->isa('Bio::Map::GeneMap') |
|
186
|
292 |
116 |
if ($type eq 'gene') { } |
|
193
|
20 |
96 |
ref $value ? : |
|
194
|
20 |
96 |
ref $value ? : |
|
195
|
113 |
3 |
$trans == 0 ? : |
|
196
|
20 |
96 |
ref $value ? : |
|
197
|
11 |
105 |
$type eq 'coding' ? : |
|
204
|
116 |
292 |
if (ref $value) |
|
210
|
408 |
0 |
if (defined $value) |
|
247
|
351 |
836 |
if (defined $num) |
|
248
|
0 |
351 |
unless &looks_like_number($num) |
|
252
|
1187 |
0 |
defined $self->{'_gene'} ? : |
|
270
|
397 |
385 |
if (defined $num) |
|
271
|
0 |
397 |
unless &looks_like_number($num) |
|
275
|
782 |
0 |
defined $self->{'_transcript'} ? : |
|
294
|
2 |
60 |
if (defined $num) |
|
295
|
1 |
1 |
if (defined $t_num) |
|
296
|
0 |
1 |
unless &looks_like_number($t_num) |
|
299
|
0 |
2 |
unless &looks_like_number($num) |
|
323
|
0 |
0 |
if (defined $num) |
|
324
|
0 |
0 |
if (defined $t_num) |
|
325
|
0 |
0 |
unless &looks_like_number($t_num) |
|
328
|
0 |
0 |
unless &looks_like_number($num) |
|
350
|
1 |
33 |
if (defined $num) |
|
351
|
0 |
1 |
unless &looks_like_number($num) |
|
355
|
34 |
0 |
defined $self->{'_coding'} ? : |