| line |
true |
false |
branch |
|
83
|
6 |
0 |
unless ($class =~ /Bio::Polloc::Rule::(\S+)/)
|
|
87
|
6 |
0 |
if ($type)
|
|
89
|
6 |
0 |
if $type
|
|
94
|
6 |
0 |
if ($class =~ /Bio::Polloc::Rule::(\S+)/)
|
|
95
|
6 |
0 |
if ('Bio::Polloc::RuleI'->_load_module($class))
|
|
150
|
6 |
3 |
if ($value)
|
|
152
|
0 |
6 |
unless $v
|
|
192
|
6 |
5 |
if ($#args >= 0)
|
|
196
|
0 |
11 |
if ($$self{'_context'}[0] < 0) { }
|
|
|
0 |
11 |
elsif ($$self{'_context'}[0] > 0) { }
|
|
233
|
6 |
59 |
if (defined $value)
|
|
235
|
0 |
6 |
unless defined $v
|
|
271
|
0 |
7 |
if defined $value
|
|
272
|
7 |
0 |
unless defined $$self{'_executable'}
|
|
274
|
0 |
6 |
defined $$self{'_executable'} ? :
|
|
|
1 |
6 |
defined $$self{'_executable'} && $$self{'_executable'} =~ /^(t|1|y)/i ? :
|
|
303
|
6 |
3 |
if defined $value
|
|
334
|
6 |
1 |
if ($value)
|
|
370
|
1 |
0 |
if defined $self->name
|
|
371
|
0 |
1 |
if $self->context->[0]
|
|
372
|
1 |
0 |
if defined $self->value
|
|
419
|
6 |
1 |
if (defined $value)
|
|
420
|
0 |
6 |
unless $value->isa('Bio::Polloc::RuleIO')
|
|
491
|
0 |
16 |
unless $param
|
|
493
|
9 |
7 |
if (defined $value)
|
|
522
|
0 |
1 |
if defined $source
|
|
537
|
0 |
12 |
unless $value
|
|
539
|
0 |
12 |
if $value =~ /^(patt(ern)?)$/
|
|
540
|
0 |
12 |
if $value =~ /^(prof(ile)?)$/
|
|
541
|
0 |
12 |
if $value =~ /^(rep(eat)?)$/
|
|
542
|
6 |
6 |
if $value =~ /^(t(andem)?rep(eat)?)$/
|
|
543
|
0 |
12 |
if $value =~ /^((sequence)?sim(ilarity)?|homology|ident(ity)?)$/
|
|
544
|
0 |
12 |
if $value =~ /^(cod|cds)$/
|
|
545
|
6 |
6 |
if $value =~ /^(oper(at(e|or|ion))?|bool(ean)?)$/
|
|
546
|
0 |
12 |
if $value =~ /^(comp(osition)?|content)$/
|
|
591
|
0 |
3 |
unless (defined $value)
|
|
595
|
0 |
3 |
if (ref($value) =~ /hash/i)
|
|
599
|
0 |
3 |
ref($value) =~ /array/i ? :
|
|
601
|
0 |
3 |
unless defined $args[0]
|
|
602
|
0 |
3 |
unless ($args[0] =~ /^-/)
|
|
606
|
0 |
3 |
unless ($#args % 2)
|
|
614
|
0 |
42 |
unless defined $p
|
|
673
|
0 |
0 |
unless defined $key
|
|
675
|
0 |
0 |
if defined $$self{"_$key"}
|
|
677
|
0 |
0 |
if defined $self->value and ref($self->value) =~ /hash/i and defined $self->value->{"-$key"}
|
|
681
|
0 |
0 |
if defined $self->_qualify_value({"-$key", $self->safe_value($key)})
|
|
708
|
0 |
0 |
unless defined $self->id
|