| line |
true |
false |
branch |
|
66
|
0 |
0 |
unless $seq
|
|
67
|
0 |
0 |
unless UNIVERSAL::can($seq, 'isa')
|
|
71
|
0 |
0 |
if ($seq->isa('Bio::SeqIO'))
|
|
76
|
0 |
0 |
wantarray ? :
|
|
79
|
0 |
0 |
unless $seq->isa('Bio::Seq')
|
|
94
|
0 |
0 |
if defined $p
|
|
102
|
0 |
0 |
defined $self->ruleset ? :
|
|
|
0 |
0 |
unless my $trf = $self->_executable(defined $self->ruleset ? $self->ruleset->value('path') : undef)
|
|
107
|
0 |
0 |
unless 'File::Spec'->file_name_is_absolute($trf)
|
|
126
|
0 |
0 |
unless chdir $tmpdir
|
|
131
|
0 |
0 |
if defined $_
|
|
134
|
0 |
0 |
unless chdir $cwd
|
|
142
|
0 |
0 |
unless -e $outfile
|
|
149
|
0 |
0 |
if ($line =~ /^Parameters:\s/) { }
|
|
|
0 |
0 |
elsif ($ontable) { }
|
|
153
|
0 |
0 |
if $line =~ /^\s*$/
|
|
157
|
0 |
0 |
unless $#v == 14
|
|
160
|
0 |
0 |
if length $v[14] > $c_v{'maxsize'} or length $v[14] < $c_v{'minsize'}
|
|
161
|
0 |
0 |
if $v[2] > $c_v{'maxperiod'} or $v[2] < $c_v{'minperiod'}
|
|
162
|
0 |
0 |
if $v[3] < $c_v{'exp'}
|
|
163
|
0 |
0 |
if $v[7] < $c_v{'minscore'}
|
|
164
|
0 |
0 |
if $c_v{'maxscore'} and $v[7] > $c_v{'maxscore'}
|
|
165
|
0 |
0 |
if $v[5] < $c_v{'minsim'} or $v[5] > $c_v{'maxsim'}
|
|
169
|
0 |
0 |
defined $id ? :
|
|
185
|
0 |
0 |
wantarray ? :
|
|
198
|
28 |
0 |
defined $self->value->{$k} ? :
|
|
298
|
0 |
2 |
$Bio::Polloc::Rule::tandemrepeat::Config{'archname64'} ? :
|
|
|
0 |
2 |
$^O =~ /mswin/i ? :
|
|
|
0 |
2 |
$^O =~ /(macos|darwin)/i ? :
|
|
303
|
0 |
2 |
if $path
|
|
310
|
0 |
72 |
if $exe
|