Branch Coverage

blib/lib/Bio/ViennaNGS/UCSC.pm

Criterion	Covered	Total	%
branch	0	82	0.0

line	true	false	branch
36	0	0	unless -e $fasta_path
38	0	0	unless -d $basedir
40	0	0	unless defined $baseURL
43	0	0	if (defined $log)
44	0	0	unless open LOG, '>>', $log
47	0	0	unless ($baseURL =~ m[/$])
53	0	0	unless -d $template_path
55	0	0	unless my $faToTwoBit = can_run('faToTwoBit')
58	0	0	unless my $bedToBigBed = can_run('bedToBigBed')
73	0	0	if (defined $log)
83	0	0	if (defined $log)
87	0	0	unless ($success)
112	0	0	unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
131	0	0	unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
157	0	0	unless $template->process($description_html_file, $description_html_vars, $description_html_path)
169	0	0	unless $template->process($group_txt_file, $group_txt_vars, $group_txt_path)
192	0	0	unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
195	0	0	if (defined $log)
207	0	0	unless $species
209	0	0	unless -d $basedir
211	0	0	unless defined $baseURL
214	0	0	if (defined $log)
215	0	0	unless open LOG, '>>', $log
218	0	0	unless ($baseURL =~ m[/$])
224	0	0	unless -d $template_path
226	0	0	unless my $faToTwoBit = can_run('faToTwoBit')
229	0	0	unless my $bedToBigBed = can_run('bedToBigBed')
239	0	0	if (defined $log)
262	0	0	unless $template->process($hubtxt_file, $hubtxt_vars, "$hubtxt_path")
281	0	0	unless $template->process($genometxt_file, $genometxt_vars, $genometxt_path)
284	0	0	if (-e $chrom_sizes_file) { }
307	0	0	unless $template->process($trackDb_txt_file, $trackDb_txt_vars, $trackDb_txt_path)
310	0	0	if (defined $log)
319	0	0	unless chdir $filesdir
329	0	0	unless chdir $currentDirectory
336	0	0	unless chdir $directoryPath
367	0	0	unless chdir $currentDirectory
375	0	0	if ($digitnumber > 1) { }
421	0	0	if ($acc =~ /^(N[CST]\_\d{6})\.\d+?$/) { }
	0	0	elsif ($acc =~ /^(N[CST]\_\d{6})$/) { }
480	0	0	if ($header_skipped) { }