| line |
true |
false |
branch |
|
155
|
7 |
0 |
$p{'type'} eq 'id' ? : |
|
162
|
7 |
0 |
if ($_ =~ /$match/) |
|
172
|
7 |
0 |
if $found |
|
241
|
0 |
8 |
unless ref $table_ref |
|
255
|
0 |
8 |
unless my($names, $id, $residues, $starts, @bases) = $$table_ref =~ /$TABLE_REGEX/ |
|
295
|
231 |
591 |
$Bio::Translator::Table::degenerate2nucleotides{$base} ? : |
|
|
84 |
738 |
$Bio::Translator::Table::degenerate_hierarchy{$base} ? : |
|
310
|
1667 |
49 |
if ($residue ne 'X') |
|
316
|
52 |
1664 |
if ($start ne '-') |
|
326
|
1 |
7 |
if $p{'bootstrap'} |
|
377
|
131 |
0 |
$p{'strand'} == 1 ? : |
|
383
|
4 |
127 |
$p{'start'} ? : |
|
389
|
4 |
127 |
if $p{'start'} |
|
432
|
14426 |
41745 |
if $$table{$codon} |
|
435
|
9620 |
32125 |
unless $codon =~ /($Bio::Translator::Table::degenerate_match)/ |
|
451
|
25626 |
14161 |
unless defined $residue |
|
454
|
7129 |
7032 |
unless $consensus |
|
460
|
6466 |
7695 |
if ($residue ne $consensus) |
|
461
|
98 |
6368 |
if (defined $Bio::Translator::Table::ambiguous_forward{$residue} and defined $Bio::Translator::Table::ambiguous_forward{$consensus} and $Bio::Translator::Table::ambiguous_forward{$residue} eq $Bio::Translator::Table::ambiguous_forward{$consensus}) { } |
|
506
|
1 |
0 |
if $bootstrap |
|
548
|
3 |
21 |
if $Bio::Translator::Table::ambiguous_map{$aa} |
|
556
|
0 |
3 |
unless my $group = $aa2codons{$aa} |