| line |
true |
false |
branch |
|
81
|
0 |
2 |
if ($fq =~ /\.gz/) { }
|
|
94
|
0 |
2 |
if ($self->_is_gz) { }
|
|
98
|
0 |
0 |
unless (-e "$temporary_directory/$newfq")
|
|
158
|
0 |
1 |
unless -e $ref
|
|
160
|
0 |
1 |
if $self->verbose
|
|
163
|
0 |
1 |
if $self->verbose
|
|
166
|
0 |
1 |
if $self->verbose
|
|
170
|
0 |
1 |
if $self->verbose
|
|
175
|
0 |
1 |
if $self->verbose
|
|
179
|
0 |
1 |
if $self->verbose
|
|
186
|
0 |
0 |
if $self->verbose
|
|
190
|
0 |
0 |
if $self->verbose
|
|
194
|
0 |
0 |
if $self->verbose
|
|
203
|
0 |
0 |
if $self->verbose
|
|
229
|
1 |
7 |
unless open my $filtered_file, '<', $filtered_file_filename
|
|
233
|
2 |
20 |
if $. > 4
|
|
238
|
3 |
4 |
if ($number_of_read_lines ne 4)
|
|
243
|
1 |
3 |
if ($read_plus_sign ne '+')
|
|
330
|
0 |
0 |
if ($self->tagdirection eq '5')
|
|
331
|
0 |
0 |
if $self->verbose
|
|
347
|
0 |
0 |
if $self->verbose
|
|
403
|
0 |
0 |
if $uis > 0
|
|
409
|
0 |
0 |
if $total_uis > 0
|
|
452
|
0 |
0 |
if ($pars->is_mapped)
|