| lib/Bio/Tradis/AddTagsToSeq.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| branch | 3 | 16 | 18.7 |
| line | true | false | branch |
|---|---|---|---|
| 52 | 0 | 1 | if $self->verbose |
| 57 | 0 | 1 | if $self->verbose |
| 76 | 0 | 0 | if ($mapped and $rev) { } |
| 109 | 0 | 0 | if ($mapped) { } |
| 129 | 0 | 0 | if $self->verbose |
| 134 | 0 | 0 | if ($self->_number_of_lines_in_bam_file($outfile) != $self->_number_of_lines_in_bam_file($filename)) |
| 149 | 1 | 0 | if (defined $self->extension_to_output_switch->{$self->_file_extension}) { } |
| 161 | 0 | 0 | unless open my $fh, '-|', $self->samtools_exec . " view $filename | wc -l" |