| blib/lib/Bio/Tools/Phylo/PAML.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 34 | 36 | 94.4 |
| pod | 2 | 2 | 100.0 |
| line | count | pod | subroutine |
|---|---|---|---|
| 3 | 2 | n/a | BEGIN |
| 4 | 2 | n/a | BEGIN |
| 5 | 2 | n/a | BEGIN |
| 7 | 2 | n/a | BEGIN |
| 9 | 2 | n/a | BEGIN |
| 11 | 2 | n/a | BEGIN |
| 12 | 2 | n/a | BEGIN |
| 13 | 2 | n/a | BEGIN |
| 14 | 2 | n/a | BEGIN |
| 15 | 2 | n/a | BEGIN |
| 16 | 2 | n/a | BEGIN |
| 17 | 2 | n/a | BEGIN |
| 18 | 2 | n/a | BEGIN |
| 33 | 2 | n/a | BEGIN |
| 39 | 21 | Yes | new |
| 52 | 20 | Yes | next_result |
| 247 | 20 | n/a | _parse_summary |
| 372 | 16 | n/a | _parse_inputparams |
| 389 | 16 | n/a | _parse_codon_freqs |
| 431 | 2 | n/a | _parse_aa_freqs |
| 484 | 0 | n/a | _parse_StarDecomposition |
| 491 | 3 | n/a | _parse_aa_dists |
| 558 | 18 | n/a | _parse_patterns |
| 596 | 26 | n/a | _parse_seqs |
| 647 | 16 | n/a | _parse_codoncts |
| 650 | 16 | n/a | _parse_distmat |
| 731 | 8 | n/a | _parse_PairwiseCodon |
| 809 | 2 | n/a | _parse_YN_Pairwise |
| 857 | 13 | n/a | _parse_Forestry |
| 970 | 9 | n/a | _parse_NSsitesBatch |
| 1190 | 6 | n/a | _parse_Pos_selected_sites |
| 1239 | 10 | n/a | _parse_branch_dnds |
| 1272 | 2 | n/a | _parse_nt_freqs |
| 1320 | 2 | n/a | _parse_nt_dists |
| 1396 | 0 | n/a | _parse_rate_parametes |
| 1440 | 20 | n/a | _parse_rst |