line |
count |
pod |
subroutine |
3
|
2 |
n/a |
BEGIN |
4
|
2 |
n/a |
BEGIN |
5
|
2 |
n/a |
BEGIN |
7
|
2 |
n/a |
BEGIN |
17
|
9 |
Yes |
new |
116
|
14 |
Yes |
model_num |
123
|
12 |
Yes |
model_description |
130
|
7 |
Yes |
time_used |
137
|
15 |
Yes |
kappa |
144
|
17 |
Yes |
num_site_classes |
151
|
12 |
Yes |
dnds_site_classes |
158
|
1 |
Yes |
get_pos_selected_sites |
163
|
8 |
Yes |
add_pos_selected_site |
170
|
1 |
Yes |
get_NEB_pos_selected_sites |
175
|
8 |
Yes |
add_NEB_pos_selected_site |
184
|
0 |
Yes |
get_BEB_pos_selected_sites |
189
|
9 |
Yes |
add_BEB_pos_selected_site |
196
|
5 |
Yes |
next_tree |
202
|
2 |
Yes |
get_trees |
208
|
0 |
Yes |
rewind_tree_iterator |
213
|
9 |
Yes |
add_tree |
222
|
4 |
Yes |
shape_params |
229
|
15 |
Yes |
likelihood |