| line |
true |
false |
branch |
|
37
|
9 |
0 |
if ($trees) |
|
38
|
0 |
9 |
if (not ref($trees) =~ /ARRAY/i) { } |
|
47
|
6 |
3 |
if ($pos_sites) |
|
48
|
0 |
6 |
if (not ref($pos_sites) =~ /ARRAY/i) { } |
|
52
|
0 |
8 |
unless (ref($s) =~ /ARRAY/i) |
|
60
|
6 |
3 |
if ($beb_sites) |
|
61
|
0 |
6 |
if (not ref($beb_sites) =~ /ARRAY/i) { } |
|
65
|
0 |
9 |
unless (ref($s) =~ /ARRAY/i) |
|
73
|
6 |
3 |
if ($neb_sites) |
|
74
|
0 |
6 |
if (not ref($neb_sites) =~ /ARRAY/i) { } |
|
78
|
0 |
8 |
unless (ref($s) =~ /ARRAY/i) |
|
87
|
7 |
2 |
if defined $modelnum |
|
88
|
7 |
2 |
if defined $modeldesc |
|
89
|
9 |
0 |
if defined $kappa |
|
90
|
7 |
2 |
if defined $timeused |
|
91
|
9 |
0 |
if defined $likelihood |
|
94
|
8 |
1 |
if (defined $dnds_classes) |
|
95
|
0 |
8 |
if (not ref($dnds_classes) =~ /HASH/i && defined $dnds_classes->{'p'} && defined $dnds_classes->{'w'}) { } |
|
103
|
3 |
6 |
if (defined $shape_params) |
|
104
|
0 |
3 |
if (not ref($shape_params) =~ /HASH/i) { } |
|
117
|
7 |
7 |
if @_ |
|
124
|
7 |
5 |
if @_ |
|
131
|
7 |
0 |
if @_ |
|
138
|
9 |
6 |
if @_ |
|
145
|
9 |
8 |
if @_ |
|
152
|
8 |
4 |
if @_ |
|
158
|
0 |
1 |
unless $_[0]{'_posselsites'} |
|
170
|
0 |
1 |
unless $_[0]{'_NEBposselsites'} |
|
184
|
0 |
0 |
unless $_[0]{'_BEBposselsites'} |
|
203
|
0 |
2 |
unless $self->{'_trees'} |
|
214
|
9 |
0 |
if ($tree and ref $tree and $tree->isa('Bio::Tree::TreeI')) |
|
223
|
3 |
1 |
if @_ |
|
230
|
9 |
6 |
if @_ |