| blib/lib/Bio/ToolBox/Data/core.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 50 | 59 | 84.7 |
| pod | 48 | 49 | 97.9 |
| line | count | pod | subroutine |
|---|---|---|---|
| 16 | 3 | n/a | BEGIN |
| 17 | 3 | n/a | BEGIN |
| 18 | 3 | n/a | BEGIN |
| 24 | 3 | n/a | BEGIN |
| 25 | 3 | n/a | BEGIN |
| 32 | 73 | Yes | new |
| 74 | 52 | Yes | verify |
| 754 | 40 | n/a | _column_is_integers |
| 770 | 29 | n/a | _column_is_numeric |
| 789 | 13 | n/a | _column_is_comma_integers |
| 805 | 27 | n/a | _column_is_stranded |
| 820 | 1 | Yes | open_database |
| 839 | 15 | Yes | open_meta_database |
| 853 | 0 | Yes | open_new_database |
| 860 | 12 | Yes | verify_dataset |
| 890 | 2 | Yes | delete_column |
| 927 | 3 | Yes | reorder_column |
| 987 | 54 | Yes | feature |
| 995 | 37 | Yes | feature_type |
| 1018 | 68 | Yes | program |
| 1026 | 46 | Yes | database |
| 1037 | 0 | Yes | bam_adapter |
| 1042 | 0 | Yes | big_adapter |
| 1047 | 223 | Yes | format |
| 1055 | 102 | Yes | gff |
| 1063 | 137 | Yes | bed |
| 1071 | 62 | Yes | ucsc |
| 1079 | 44 | Yes | vcf |
| 1087 | 553 | Yes | number_columns |
| 1093 | 3 | Yes | number_rows |
| 1099 | 0 | Yes | last_column |
| 1105 | 892 | Yes | last_row |
| 1111 | 138 | Yes | filename |
| 1117 | 29 | Yes | basename |
| 1123 | 0 | Yes | path |
| 1129 | 129 | Yes | extension |
| 1139 | 26 | Yes | comments |
| 1148 | 53 | Yes | add_comment |
| 1156 | 1 | Yes | delete_comment |
| 1167 | 0 | Yes | vcf_headers |
| 1199 | 0 | Yes | rewrite_vcf_headers |
| 1238 | 4 | Yes | list_columns |
| 1248 | 24 | Yes | name |
| 1265 | 26 | Yes | metadata |
| 1294 | 0 | Yes | delete_metadata |
| 1314 | 2 | Yes | copy_metadata |
| 1331 | 220 | Yes | find_column |
| 1354 | 24 | n/a | _find_column_indices |
| 1416 | 26 | Yes | chromo_column |
| 1430 | 117 | Yes | start_column |
| 1444 | 21 | Yes | stop_column |
| 1459 | 109 | No | coord_column |
| 1473 | 21 | Yes | strand_column |
| 1487 | 72 | Yes | name_column |
| 1501 | 14 | Yes | type_column |
| 1515 | 71 | Yes | id_column |
| 1529 | 0 | Yes | score_column |
| 1544 | 90 | Yes | interbase |
| 1572 | 13 | Yes | get_seqfeature |