| blib/lib/Bio/ToolBox/parser/bed.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 21 | 60 | 35.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 474 | 20 | 0 | 0 | $bed == 4 && $Stream->extension =~ /bdg|bedgraph/i |
| 972 | 6 | 0 | 0 | $chrom and $start |
| 6 | 0 | 0 | $chrom and $start and $end | |
| 974 | 0 | 0 | 0 | $g->strand == $strand and not $g->start > $end || $g->end < $start |
| line | l | !l | condition |
|---|---|---|---|
| 763 | 22 | 0 | $data[3] || undef |
| 0 | 22 | $data[4] || undef | |
| 22 | 0 | $data[5] || undef | |
| 788 | 0 | 70 | $data[8] ||= 0 |
| 789 | 70 | 0 | $data[9] ||= 1 |
| 791 | 54 | 16 | $data[11] ||= 0 |
| 943 | 0 | 0 | $opt{'name'} || $opt{'display_name'} || undef |
| 944 | 0 | 0 | $opt{'id'} || $opt{'primary_id'} || undef |
| 945 | 0 | 32 | $opt{'chrom'} || $opt{'seq_id'} || undef |
| 946 | 0 | 32 | $opt{'start'} || undef |
| 947 | 0 | 32 | $opt{'stop'} || $opt{'end'} || undef |
| 948 | 0 | 32 | $opt{'strand'} || 0 |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 339 | 12 | 0 | 0 | exists $options{'file'} or $options{'table'} |
| 340 | 12 | 0 | 0 | $options{'file'} ||= $options{'table'} |
| 595 | 0 | 0 | 124 | $line =~ /^#/ or $line =~ /^(?:track|browser)/ |
| 0 | 0 | 124 | $line =~ /^#/ or $line =~ /^(?:track|browser)/ or not $line =~ /\w+/ | |
| 786 | 70 | 0 | 0 | $data[6] ||= $data[2] |
| 787 | 70 | 0 | 0 | $data[7] ||= $data[2] |
| 790 | 70 | 0 | 0 | $data[10] ||= $data[7] - $data[6] |
| 974 | 0 | 0 | 0 | $g->start > $end || $g->end < $start |