| line |
count |
pod |
subroutine |
|
992
|
3 |
n/a |
BEGIN |
|
993
|
3 |
n/a |
BEGIN |
|
994
|
3 |
n/a |
BEGIN |
|
1001
|
3 |
n/a |
BEGIN |
|
1002
|
3 |
n/a |
BEGIN |
|
1013
|
353 |
No |
new |
|
1023
|
0 |
Yes |
data |
|
1027
|
0 |
Yes |
column_name |
|
1033
|
24 |
Yes |
feature_type |
|
1039
|
65 |
Yes |
row_index |
|
1045
|
0 |
No |
line_number |
|
1059
|
196 |
Yes |
row_values |
|
1067
|
341 |
Yes |
value |
|
1080
|
21 |
Yes |
seq_id |
|
1126
|
119 |
Yes |
start |
|
1188
|
38 |
Yes |
end |
|
1238
|
29 |
Yes |
strand |
|
1278
|
2 |
n/a |
_strand |
|
1306
|
0 |
n/a |
_from_coordinate_string |
|
1319
|
3 |
Yes |
peak |
|
1334
|
5 |
Yes |
midpoint |
|
1347
|
76 |
Yes |
display_name |
|
1377
|
3 |
Yes |
coordinate |
|
1391
|
9 |
Yes |
type |
|
1423
|
66 |
Yes |
primary_id |
|
1438
|
2 |
Yes |
length |
|
1458
|
0 |
Yes |
score |
|
1464
|
0 |
Yes |
attributes |
|
1471
|
1 |
Yes |
gff_attributes |
|
1487
|
0 |
Yes |
vcf_attributes |
|
1520
|
0 |
Yes |
rewrite_attributes |
|
1527
|
1 |
Yes |
rewrite_gff_attributes |
|
1553
|
0 |
Yes |
rewrite_vcf_attributes |
|
1601
|
4 |
Yes |
seqfeature |
|
1630
|
1 |
Yes |
segment |
|
1650
|
0 |
Yes |
get_features |
|
1667
|
0 |
Yes |
get_sequence |
|
1705
|
0 |
n/a |
_get_subfeature_sequence |
|
1740
|
0 |
n/a |
_get_subfeatures |
|
1784
|
7 |
Yes |
get_score |
|
1859
|
0 |
n/a |
_get_subfeature_scores |
|
1894
|
1 |
Yes |
get_relative_point_position_scores |
|
1952
|
4 |
Yes |
get_region_position_scores |
|
2017
|
0 |
n/a |
_get_subfeature_position_scores |
|
2118
|
9 |
n/a |
_calculate_reference |
|
2158
|
0 |
n/a |
_avoid_positions |
|
2218
|
5 |
n/a |
_convert_to_relative_positions |
|
2235
|
0 |
n/a |
_process_exon_scores |
|
2267
|
0 |
Yes |
fetch_alignments |
|
2345
|
0 |
Yes |
bed_string |
|
2399
|
0 |
Yes |
gff_string |