Subroutine Coverage
| blib/lib/Bio/ToolBox/parser/bed.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
26 |
32 |
81.2
|
| pod |
18 |
22 |
81.8
|
| line |
count |
pod |
subroutine |
|
299
|
1 |
n/a |
BEGIN |
|
300
|
1 |
n/a |
BEGIN |
|
301
|
1 |
n/a |
BEGIN |
|
309
|
20 |
Yes |
new |
|
375
|
28 |
Yes |
version |
|
379
|
106 |
Yes |
source |
|
388
|
8 |
No |
simplify |
|
393
|
12 |
No |
do_gene |
|
398
|
98 |
Yes |
do_exon |
|
407
|
62 |
Yes |
do_cds |
|
416
|
58 |
Yes |
do_utr |
|
425
|
62 |
Yes |
do_codon |
|
434
|
229 |
No |
do_name |
|
439
|
229 |
No |
share |
|
443
|
346 |
Yes |
fh |
|
448
|
20 |
Yes |
open_file |
|
571
|
8 |
Yes |
typelist |
|
585
|
138 |
Yes |
next_feature |
|
617
|
36 |
Yes |
next_top_feature |
|
629
|
6 |
Yes |
top_features |
|
640
|
14 |
Yes |
parse_file |
|
667
|
16 |
n/a |
_parse_narrowPeak |
|
697
|
0 |
n/a |
_parse_broadPeak |
|
726
|
0 |
n/a |
_parse_bedGraph |
|
746
|
22 |
n/a |
_parse_bed |
|
768
|
70 |
n/a |
_parse_bed12 |
|
826
|
16 |
n/a |
_parse_gappedPeak |
|
878
|
0 |
Yes |
seq_ids |
|
888
|
0 |
Yes |
seq_id_lengths |
|
896
|
0 |
n/a |
_get_seq_ids |
|
908
|
0 |
Yes |
comments |
|
915
|
38 |
Yes |
find_gene |