| blib/lib/Bio/ToolBox/Data/core.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 47 | 57 | 82.4 |
| pod | 46 | 47 | 97.8 |
| line | count | pod | subroutine |
|---|---|---|---|
| 16 | 3 | n/a | BEGIN |
| 17 | 3 | n/a | BEGIN |
| 18 | 3 | n/a | BEGIN |
| 24 | 3 | n/a | BEGIN |
| 25 | 3 | n/a | BEGIN |
| 32 | 72 | Yes | new |
| 73 | 52 | Yes | verify |
| 753 | 40 | n/a | _column_is_integers |
| 769 | 29 | n/a | _column_is_numeric |
| 788 | 13 | n/a | _column_is_comma_integers |
| 804 | 27 | n/a | _column_is_stranded |
| 819 | 1 | Yes | open_database |
| 838 | 15 | Yes | open_meta_database |
| 852 | 0 | Yes | open_new_database |
| 859 | 12 | Yes | verify_dataset |
| 889 | 2 | Yes | delete_column |
| 926 | 3 | Yes | reorder_column |
| 986 | 52 | Yes | feature |
| 994 | 40 | Yes | feature_type |
| 1017 | 68 | Yes | program |
| 1025 | 45 | Yes | database |
| 1036 | 0 | Yes | bam_adapter |
| 1041 | 0 | Yes | big_adapter |
| 1046 | 182 | No | format |
| 1054 | 91 | Yes | gff |
| 1072 | 134 | Yes | bed |
| 1080 | 56 | Yes | ucsc |
| 1088 | 39 | Yes | vcf |
| 1096 | 552 | Yes | number_columns |
| 1102 | 0 | Yes | last_column |
| 1109 | 892 | Yes | last_row |
| 1115 | 138 | Yes | filename |
| 1121 | 29 | Yes | basename |
| 1127 | 0 | Yes | path |
| 1133 | 124 | Yes | extension |
| 1143 | 26 | Yes | comments |
| 1152 | 53 | Yes | add_comment |
| 1160 | 1 | Yes | delete_comment |
| 1171 | 0 | Yes | vcf_headers |
| 1203 | 0 | Yes | rewrite_vcf_headers |
| 1242 | 4 | Yes | list_columns |
| 1252 | 115 | Yes | name |
| 1269 | 24 | Yes | metadata |
| 1298 | 0 | Yes | delete_metadata |
| 1318 | 2 | Yes | copy_metadata |
| 1335 | 187 | Yes | find_column |
| 1358 | 23 | n/a | _find_column_indices |
| 1387 | 37 | Yes | chromo_column |
| 1394 | 118 | Yes | start_column |
| 1401 | 33 | Yes | stop_column |
| 1408 | 0 | Yes | end_column |
| 1412 | 32 | Yes | strand_column |
| 1419 | 72 | Yes | name_column |
| 1426 | 12 | Yes | type_column |
| 1433 | 70 | Yes | id_column |
| 1440 | 0 | Yes | score_column |
| 1456 | 13 | Yes | get_seqfeature |