| blib/lib/Bio/ToolBox/Data/Stream.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 19 | 47 | 40.4 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 626 | 2 | 26 | 0 | defined $args{'in'} and defined $args{'out'} |
| 677 | 1 | 0 | 0 | exists $args{'gff'} and $args{'gff'} |
| 0 | 1 | 0 | exists $args{'bed'} and $args{'bed'} | |
| 0 | 0 | 0 | exists $args{'ucsc'} and $args{'ucsc'} | |
| 693 | 0 | 0 | 1 | $args{'bed'} =~ /^\d{1,2}$/ and $args{'bed'} >= 3 |
| 716 | 2 | 0 | 0 | exists $args{'gz'} and $args{'gz'} |
| 0 | 0 | 0 | exists $args{'gz'} and $args{'gz'} and not $self->extension =~ /gz$/ |
| line | l | !l | condition |
|---|---|---|---|
| 620 | 0 | 2 | $args{'file'} || undef |
| 621 | 2 | 26 | $args{'out'} ||= undef |
| 630 | 0 | 28 | $args{'noheader'} ||= 0 |
| 724 | 0 | 2 | $args{'features'} || undef |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 620 | 26 | 0 | 2 | $args{'in'} ||= $args{'file'} || undef |
| 622 | 26 | 2 | 0 | $args{'in'} or $args{'out'} |
| 724 | 0 | 0 | 2 | $args{'feature'} ||= $args{'features'} || undef |
| 791 | 0 | 0 | 4 | $self->gff or $self->bed |
| 0 | 0 | 4 | $self->gff or $self->bed or $self->ucsc | |
| 0 | 0 | 4 | $self->gff or $self->bed or $self->ucsc or $self->vcf |