| line |
count |
pod |
subroutine |
|
981
|
3 |
n/a |
BEGIN |
|
982
|
3 |
n/a |
BEGIN |
|
983
|
3 |
n/a |
BEGIN |
|
990
|
3 |
n/a |
BEGIN |
|
991
|
3 |
n/a |
BEGIN |
|
1002
|
349 |
No |
new |
|
1012
|
0 |
Yes |
data |
|
1016
|
0 |
Yes |
column_name |
|
1022
|
28 |
Yes |
feature_type |
|
1028
|
65 |
Yes |
row_index |
|
1034
|
0 |
No |
line_number |
|
1048
|
196 |
Yes |
row_values |
|
1056
|
390 |
Yes |
value |
|
1069
|
21 |
Yes |
seq_id |
|
1096
|
109 |
Yes |
start |
|
1142
|
28 |
Yes |
end |
|
1174
|
25 |
Yes |
strand |
|
1200
|
18 |
n/a |
_strand |
|
1229
|
75 |
Yes |
display_name |
|
1259
|
3 |
Yes |
coordinate |
|
1273
|
9 |
Yes |
type |
|
1305
|
65 |
Yes |
primary_id |
|
1320
|
0 |
Yes |
length |
|
1340
|
0 |
Yes |
score |
|
1346
|
0 |
Yes |
attributes |
|
1353
|
0 |
Yes |
gff_attributes |
|
1369
|
0 |
Yes |
vcf_attributes |
|
1402
|
0 |
Yes |
rewrite_attributes |
|
1409
|
0 |
Yes |
rewrite_gff_attributes |
|
1435
|
0 |
Yes |
rewrite_vcf_attributes |
|
1483
|
9 |
Yes |
seqfeature |
|
1512
|
1 |
Yes |
segment |
|
1532
|
0 |
Yes |
get_features |
|
1549
|
0 |
Yes |
get_sequence |
|
1587
|
0 |
n/a |
_get_subfeature_sequence |
|
1622
|
0 |
n/a |
_get_subfeatures |
|
1666
|
7 |
Yes |
get_score |
|
1741
|
0 |
n/a |
_get_subfeature_scores |
|
1776
|
1 |
Yes |
get_relative_point_position_scores |
|
1834
|
4 |
Yes |
get_region_position_scores |
|
1899
|
0 |
n/a |
_get_subfeature_position_scores |
|
2000
|
5 |
n/a |
_calculate_reference |
|
2026
|
0 |
n/a |
_avoid_positions |
|
2086
|
5 |
n/a |
_convert_to_relative_positions |
|
2103
|
0 |
n/a |
_process_exon_scores |
|
2135
|
0 |
Yes |
fetch_alignments |
|
2213
|
0 |
Yes |
bed_string |
|
2260
|
0 |
Yes |
gff_string |