| line |
true |
false |
branch |
|
29
|
0 |
0 |
unless open my $fh, '>', $self->output_filename
|
|
36
|
0 |
0 |
unless open my $fh, '>', $self->output_header_filename
|
|
78
|
0 |
0 |
unless defined $self->groups_to_contigs->{$annotated_group_name} and defined $self->groups_to_contigs->{$annotated_group_name}{$self->ordering_key}
|
|
84
|
0 |
0 |
if defined $self->groups_to_contigs->{$annotated_group_name}{'comment'} and $self->groups_to_contigs->{$annotated_group_name}{'comment'} ne ''
|
|
91
|
0 |
0 |
if (defined $group_to_file_genes and @{$group_to_file_genes;} > 0)
|
|
113
|
2 |
12 |
if @{$taxon_names;} == 1
|
|
115
|
2 |
10 |
if @{$taxon_names;} == $number_of_files
|
|
141
|
0 |
0 |
unless defined $accessory_label
|
|
156
|
0 |
0 |
unless defined $self->groups_to_contigs->{$annotated_group_name} and defined $self->groups_to_contigs->{$annotated_group_name}{$self->ordering_key}
|
|
161
|
0 |
0 |
if defined $self->groups_to_contigs->{$annotated_group_name}{'comment'} and $self->groups_to_contigs->{$annotated_group_name}{'comment'} ne ''
|
|
181
|
0 |
0 |
unless defined $self->groups_to_contigs->{$annotated_group_name}{'accessory_label'}
|
|
182
|
0 |
0 |
unless defined $self->groups_to_contigs->{$annotated_group_name}{$self->ordering_key}
|
|
183
|
0 |
0 |
if $self->groups_to_contigs->{$annotated_group_name}{$self->ordering_key} eq ''
|
|
191
|
0 |
0 |
unless defined $fragment_numbers{$accessory_label}
|
|
194
|
0 |
0 |
if (@sorted_fragment > 1) { }
|
|
|
0 |
0 |
elsif (@sorted_fragment == 1) { }
|
|
198
|
0 |
0 |
if not defined $min && defined $max or $min eq '' or $max eq ''
|
|
203
|
0 |
0 |
if not defined $min or $min eq ''
|