| lib/Bio/Roary/CommandLine/GeneAlignmentFromNucleotides.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| branch | 0 | 18 | 0.0 |
| line | true | false | branch |
|---|---|---|---|
| 39 | 0 | 0 | if (defined $verbose) |
| 43 | 0 | 0 | if defined $mafft |
| 44 | 0 | 0 | if defined $help |
| 45 | 0 | 0 | if (@{$self->args;} == 0) |
| 50 | 0 | 0 | unless (-e $filename) |
| 61 | 0 | 0 | if $self->help |
| 62 | 0 | 0 | if (defined $self->_error_message) |
| 75 | 0 | 0 | if ($sort_fasta_before->sequences_unaligned == 1 or $sort_fasta_before->sequences_unaligned == 0 and $sort_fasta_before->similarity <= $self->_min_similarity) { } |
| 77 | 0 | 0 | if ($self->mafft == 1) { } |