| blib/lib/Bio/Phylo/Parsers/Nexus.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 45 | 53 | 84.9 |
| pod | n/a | ||
| line | count | pod | subroutine |
|---|---|---|---|
| 2 | 6 | n/a | BEGIN |
| 3 | 6 | n/a | BEGIN |
| 4 | 6 | n/a | BEGIN |
| 5 | 6 | n/a | BEGIN |
| 6 | 6 | n/a | BEGIN |
| 7 | 6 | n/a | BEGIN |
| 123 | 15 | n/a | _process_defaults |
| 152 | 15 | n/a | _parse |
| 164 | 6 | n/a | BEGIN |
| 235 | 15 | n/a | _stringify |
| 302 | 15 | n/a | _tokenize |
| 481 | 13 | n/a | _post_process |
| 525 | 14 | n/a | _nexus |
| 532 | 43 | n/a | _begin |
| 537 | 18 | n/a | _taxa |
| 550 | 17 | n/a | _charset |
| 575 | 19 | n/a | _taxset |
| 600 | 0 | n/a | _interleave |
| 609 | 25 | n/a | _title |
| 621 | 2 | n/a | _link |
| 638 | 22 | n/a | _dimensions |
| 644 | 39 | n/a | _ntax |
| 653 | 72 | n/a | _taxlabels |
| 668 | 0 | n/a | _blockid |
| 677 | 0 | n/a | _data |
| 686 | 9 | n/a | _characters |
| 695 | 27 | n/a | _nchar |
| 703 | 9 | n/a | _format |
| 709 | 27 | n/a | _datatype |
| 718 | 0 | n/a | _matchchar |
| 726 | 0 | n/a | _items |
| 732 | 27 | n/a | _gap |
| 743 | 27 | n/a | _missing |
| 754 | 15 | n/a | _symbols |
| 765 | 0 | n/a | _charlabels |
| 772 | 18 | n/a | _charstatelabels |
| 781 | 0 | n/a | _statelabels |
| 798 | 57 | n/a | _add_matrix_metadata |
| 827 | 48 | n/a | _add_tokens_to_row |
| 874 | 85 | n/a | _find_last_seen_taxa_block |
| 892 | 4 | n/a | _find_last_seen_matrix |
| 910 | 74 | n/a | _set_taxon |
| 928 | 132 | n/a | _resolve_taxon |
| 960 | 39 | n/a | _resolve_ambig |
| 993 | 0 | n/a | _codons |
| 1001 | 57 | n/a | _matrix |
| 1084 | 2 | n/a | _bad_format |
| 1086 | 408 | n/a | _current |
| 1089 | 5 | n/a | _trees |
| 1100 | 171 | n/a | _translate |
| 1122 | 212 | n/a | _tree |
| 1162 | 33 | n/a | _end |
| 1194 | 189 | n/a | _semicolon |