| line |
count |
pod |
subroutine |
|
2
|
1 |
n/a |
BEGIN |
|
3
|
1 |
n/a |
BEGIN |
|
4
|
1 |
n/a |
BEGIN |
|
5
|
1 |
n/a |
BEGIN |
|
6
|
1 |
n/a |
BEGIN |
|
7
|
1 |
n/a |
BEGIN |
|
8
|
1 |
n/a |
BEGIN |
|
9
|
1 |
n/a |
BEGIN |
|
13
|
1 |
n/a |
BEGIN |
|
14
|
1 |
n/a |
BEGIN |
|
207
|
5 |
Yes |
sample |
|
279
|
0 |
n/a |
__ANON__ |
|
365
|
0 |
n/a |
_sample_newick |
|
369
|
0 |
n/a |
__ANON__ |
|
406
|
1 |
Yes |
sample_b |
|
482
|
1 |
Yes |
sample_bd |
|
519
|
1 |
n/a |
BEGIN |
|
521
|
1 |
n/a |
BEGIN |
|
597
|
1 |
Yes |
sample_incomplete_sampling_bd |
|
647
|
1 |
n/a |
BEGIN |
|
649
|
1 |
n/a |
BEGIN |
|
651
|
1 |
n/a |
BEGIN |
|
653
|
1 |
n/a |
BEGIN |
|
666
|
1 |
n/a |
BEGIN |
|
686
|
1 |
n/a |
BEGIN |
|
769
|
1 |
Yes |
sample_memoryless_b |
|
836
|
1 |
Yes |
sample_constant_rate_bd |
|
996
|
20 |
Yes |
constant_rate_birth |
|
1021
|
0 |
Yes |
external_model |
|
1052
|
95 |
Yes |
constant_rate_birth_death |
|
1205
|
0 |
Yes |
diversity_dependent_speciation |
|
1368
|
0 |
No |
temporal_shift_birth_death |
|
1531
|
0 |
Yes |
evolving_speciation_rate |
|
1681
|
0 |
Yes |
clade_shifts |
|
1950
|
0 |
Yes |
beta_binomial |
|
2101
|
15 |
No |
copy_tree |
|
2124
|
843 |
No |
truncate_tree_time |
|
2166
|
5 |
No |
truncate_tree_size |
|
2199
|
0 |
n/a |
_get_ultrametric_size |
|
2235
|
0 |
No |
remove_extinct_species |
|
2277
|
5 |
No |
prune_tips |
|
2284
|
1077 |
n/a |
__ANON__ |
|
2322
|
89 |
No |
lineage_through_time |
|
2368
|
6319 |
n/a |
_recursive_ltt_helper |
|
2402
|
1077 |
n/a |
_calc_node_properties |
|
2446
|
0 |
No |
nchoosek |