| line |
true |
false |
branch |
|
142
|
0 |
0 |
if ($ADJUSTMENT_FOR{$domain->target_name})
|
|
151
|
0 |
0 |
if ($self->gene_begin > $self->gene_end) { }
|
|
162
|
0 |
0 |
if ($gap_coords) { }
|
|
163
|
0 |
0 |
if $start <= 0
|
|
164
|
0 |
0 |
if $end > $gene_end
|
|
169
|
0 |
0 |
if $start < $gap_coords->[0]
|
|
170
|
0 |
0 |
if $end >= $gap_coords->[1]
|
|
190
|
0 |
0 |
unless $b->score <=> $Bio::Palantir::Roles::Fillable::a->{'score'}
|
|
200
|
0 |
0 |
if $deja_vu{$ref_hit}
|
|
210
|
0 |
0 |
if $deja_vu{$cmp_hit}
|
|
214
|
0 |
0 |
unless ($x2 > $y1 or $y2 < $x1)
|
|
218
|
0 |
0 |
if ($from_seq == 1) { }
|
|
219
|
0 |
0 |
if $sorted_domains[$cmp_hit]->class eq $sorted_domains[$ref_hit]->class
|
|
247
|
0 |
0 |
if ($sorted_domains[$i]->end >= $sorted_domains[$i + 1]->begin)
|
|
254
|
0 |
0 |
if ($adjust_start > 0)
|
|
256
|
0 |
0 |
if ($sorted_domains[$i + 1]->begin + $adjust_start > $sorted_domains[$i]->end) { }
|
|
271
|
0 |
0 |
if ($sorted_domains[$i]->end >= $sorted_domains[$i + 1]->begin)
|
|
278
|
0 |
0 |
if ($adjust_end > 0)
|
|
280
|
0 |
0 |
if ($sorted_domains[$i]->end - $adjust_end < $sorted_domains[$i + 1]->begin) { }
|
|
321
|
0 |
0 |
unless ($hmmdb_for{$domain->symbol})
|
|
323
|
0 |
0 |
if ($domain->function =~ /MT | ^Amt$ | Aminotran/msx) { }
|
|
360
|
0 |
0 |
unless (values %subtype_for)
|
|
433
|
0 |
0 |
unless (%domain_for)
|
|
466
|
0 |
0 |
if (not $domain->function or $domain->function =~ /NA/imsx)
|
|
494
|
0 |
0 |
if $hit->evalue > $evalue_threshold
|