| line |
true |
false |
branch |
|
69
|
2 |
12 |
unless ($type) |
|
78
|
12 |
2 |
if (defined $commands and @$commands) |
|
105
|
7 |
0 |
$flags =~ /vector/i ? : |
|
106
|
1 |
6 |
$flags =~ /notokens/i ? : |
|
110
|
6 |
1 |
if ($tokens) { } |
|
147
|
6 |
5 |
unless defined $command |
|
152
|
0 |
5 |
if ($value eq 'irrev.up' or $value eq 'irrev.dn') |
|
153
|
0 |
5 |
if ($value eq 'dollo.up' or $value eq 'dollo.dn') |
|
175
|
10 |
1 |
if (defined $opts) { } |
|
179
|
8 |
10 |
if ($option eq 'deftype') { } |
|
|
1 |
9 |
elsif ($option eq 'polytcount') { } |
|
|
5 |
4 |
elsif ($option eq 'gapmode') { } |
|
180
|
2 |
6 |
unless ($value =~ /^(unord|ord|irrev|irrev\.up|irrev\.dn|dollo|dollo\.up|dollo\.dn)$/i) |
|
186
|
0 |
1 |
unless ($value =~ /^(maxsteps|minsteps)$/i) |
|
192
|
1 |
4 |
unless ($value =~ /^(missing|newstate)$/i) |
|
202
|
3 |
15 |
if ($is_ok == 0) |
|
228
|
0 |
9 |
unless defined $option |
|
230
|
7 |
2 |
if ($option =~ qr/^(?:deftype|polytcount|gapmode)$/) { } |
|
231
|
5 |
2 |
if (defined $$self{'options'}{$option}) { } |
|
239
|
1 |
1 |
if (defined $$self{'options'}{$option}) { } |
|
260
|
4 |
0 |
if (defined $option and defined $value) { } |
|
296
|
3 |
0 |
if (defined $$self{'options'}) { } |
|
300
|
9 |
0 |
if (defined $value) |
|
324
|
2 |
0 |
if (defined $options) { } |
|
360
|
0 |
14 |
unless (shift())->{'assumptions'} |
|
374
|
0 |
0 |
unless ($self->get_assumptions) |
|
409
|
1 |
2 |
unless ($self->SUPER::equals($block)) |
|
414
|
0 |
2 |
if (@weightset1 != @weightset2) |
|
427
|
0 |
0 |
unless ($weightset1[$i]->equals($weightset2[$i])) |
|
452
|
3 |
2 |
if (defined $value and $value ne '') |
|
456
|
2 |
2 |
if ($return_val ne '') |
|
481
|
2 |
0 |
if ($assumption->is_wt) |
|
485
|
0 |
2 |
unless ($assumption->_is_tokens) |
|
489
|
2 |
0 |
if ($assumption->_is_vector) |
|
497
|
4 |
0 |
unless $$self{'unknown'} |
|
504
|
0 |
1 |
if $Bio::NEXUS::AssumptionsBlock::AUTOLOAD =~ /DESTROY$/ |
|
512
|
0 |
1 |
if (defined $synonym_for{$Bio::NEXUS::AssumptionsBlock::AUTOLOAD}) { } |