Condition Coverage

blib/lib/Bio/MUST/Core/Taxonomy.pm

Criterion	Covered	Total	%
condition	0	73	0.0

and 3 conditions

line	!l	l&&!r	l&&r	condition
415	0	0	0	defined $strain_key and length $strain_key
485	0	0	0	$_[0] =~ / [^A-Za-z0-9] /msx and $_[1] =~ / [A-Za-z0-9] /msx
	0	0	0	$_[0] =~ / [A-Za-z0-9] /msx and $_[1] =~ / [^A-Za-z0-9] /msx
979	0	0	0	not $is_named and $rank >= $target_for{'name'}
1405	0	0	0	$got_taxon and $exp_taxon
1519	0	0	0	-r $gcanamefile and -r $gcanodefile
1539	0	0	0	-r file($tax_dir, "names.dmp") and -r file($tax_dir, "nodes.dmp")
1803	0	0	0	-r $new_arcfile and -r $new_bacfile
1915	0	0	0	-r $name_file and -r $node_file
1919	0	0	0	-r $gcanamefile and -r $gcanodefile

or 2 conditions

line	l	!l	condition
753	0	0	$seq_id->full_id \|\| q['']
852	0	0	$_->[$i] // ""
858	0	0	$_->[$i] // ""
935	0	0	shift() // {}
1142	0	0	shift() // {}
1144	0	0	$args->{'column'} // 1
1192	0	0	$family_for{$abbr_id} // ""
1448	0	0	shift() // {}
1465	0	0	shift() // {}
1467	0	0	$args->{'gi_mapper'} // 0
1661	0	0	$rank_for{$name_for{$accession}} // "no rank"
1889	0	0	$tree_ref->{$taxon_id}{'children'} //= {}
1957	0	0	$tree_ref->{'uniq_name'} // ""
1958	0	0	$tree_ref->{'gca'} // []

or 3 conditions

line	l	!l&&r	!l&&!r	condition
485	0	0	0	$_[0] =~ / [^A-Za-z0-9] /msx and $_[1] =~ / [A-Za-z0-9] /msx or $_[0] =~ / [A-Za-z0-9] /msx and $_[1] =~ / [^A-Za-z0-9] /msx
490	0	0	0	$_[0] =~ / [A-Za-z0-9] /msx or $_[1] =~ / [A-Za-z0-9] /msx
1145	0	0	0	$args->{'separator'} // qr/\t/msx
1157	0	0	0	$line =~ /$Bio::MUST::Core::Taxonomy::EMPTY_LINE/ or $line =~ /$Bio::MUST::Core::Taxonomy::COMMENT_LINE/
1609	0	0	0	$line =~ /$Bio::MUST::Core::Taxonomy::EMPTY_LINE/ or $line =~ /$Bio::MUST::Core::Taxonomy::COMMENT_LINE/