| line |
true |
false |
branch |
|
134
|
123 |
94 |
if ($self->state_at($site)) { }
|
|
135
|
40 |
83 |
if $start < 0
|
|
140
|
34 |
60 |
if ($start >= 0)
|
|
150
|
6 |
8 |
if $start >= 0
|
|
214
|
35213 |
18483 |
$state_n > 1 ? :
|
|
247
|
7118 |
19114 |
$state_n >= 2 ? :
|
|
260
|
9 |
4 |
if 0 < $max_res and $max_res < 1
|
|
341
|
63822 |
22333 |
$_ > $max_res ? :
|
|
359
|
0 |
0 |
unless (defined $gb_parms_for{$mode})
|
|
372
|
0 |
0 |
$ali->is_protein ? :
|
|
384
|
0 |
0 |
if ($ret_code == 127)
|
|
400
|
0 |
0 |
if (defined $flanks)
|
|
418
|
0 |
0 |
if (defined $width and $width != $ali->width)
|
|
445
|
0 |
0 |
unless (defined $bmge_parms_for{$mode})
|
|
455
|
0 |
0 |
$ali->is_protein ? :
|
|
464
|
0 |
0 |
if ($ret_code == 127)
|
|
478
|
0 |
0 |
if ($line =~ /\s+ selected: \s+ ([\ (0-9)]+)/msx)
|
|
598
|
2 |
26232 |
if $line =~ /$Bio::MUST::Core::SeqMask::EMPTY_LINE/ or $mask->is_comment($line)
|
|
702
|
5 |
5 |
if $line =~ /$Bio::MUST::Core::SeqMask::EMPTY_LINE/ or $mask->is_comment($line)
|