Subroutine Coverage
| blib/lib/Bio/MUST/Core/Ali.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
56 |
57 |
98.2
|
| pod |
33 |
33 |
100.0
|
| line |
count |
pod |
subroutine |
|
6
|
17 |
n/a |
BEGIN |
|
7
|
17 |
n/a |
BEGIN |
|
9
|
17 |
n/a |
BEGIN |
|
10
|
17 |
n/a |
BEGIN |
|
14
|
17 |
n/a |
BEGIN |
|
15
|
17 |
n/a |
BEGIN |
|
16
|
17 |
n/a |
BEGIN |
|
17
|
17 |
n/a |
BEGIN |
|
18
|
17 |
n/a |
BEGIN |
|
19
|
17 |
n/a |
BEGIN |
|
20
|
17 |
n/a |
BEGIN |
|
22
|
17 |
n/a |
BEGIN |
|
23
|
17 |
n/a |
BEGIN |
|
24
|
17 |
n/a |
BEGIN |
|
25
|
17 |
n/a |
BEGIN |
|
84
|
1 |
Yes |
clone |
|
98
|
4 |
Yes |
get_seq_with_id |
|
101
|
10 |
n/a |
__ANON__ |
|
110
|
6 |
Yes |
__ANON__ |
|
110
|
2 |
n/a |
all_new_seqs |
|
115
|
3 |
Yes |
__ANON__ |
|
115
|
1 |
n/a |
all_but_new_seqs |
|
120
|
105 |
Yes |
all_seq_ids |
|
128
|
64 |
Yes |
has_uniq_ids |
|
137
|
77 |
Yes |
is_protein |
|
138
|
96 |
n/a |
__ANON__ |
|
144
|
310 |
Yes |
is_aligned |
|
146
|
8588 |
n/a |
__ANON__ |
|
152
|
189 |
Yes |
width |
|
158
|
365 |
n/a |
_max_seq_len |
|
165
|
1 |
Yes |
seq_len_stats |
|
177
|
2 |
Yes |
perc_miss |
|
190
|
1 |
Yes |
uc_seqs |
|
198
|
1 |
Yes |
recode_seqs |
|
206
|
1 |
Yes |
degap_seqs |
|
214
|
176 |
Yes |
spacify_seqs |
|
222
|
2 |
Yes |
gapify_seqs |
|
229
|
176 |
Yes |
trim_seqs |
|
237
|
176 |
Yes |
pad_seqs |
|
246
|
175 |
Yes |
uniformize |
|
259
|
1 |
Yes |
clear_new_tags |
|
267
|
12 |
Yes |
shorten_ids |
|
272
|
10 |
Yes |
restore_ids |
|
276
|
22 |
n/a |
_change_ids_ |
|
291
|
1 |
Yes |
apply_list |
|
308
|
40 |
n/a |
:before |
|
319
|
1845 |
n/a |
__ANON__ |
|
348
|
13 |
Yes |
idealize |
|
356
|
73 |
Yes |
gapmiss_regex |
|
361
|
1 |
Yes |
map_coords |
|
384
|
0 |
Yes |
height |
|
391
|
69 |
Yes |
load |
|
503
|
9 |
Yes |
temp_fasta |
|
526
|
105 |
Yes |
load_phylip |
|
707
|
2 |
Yes |
load_stockholm |
|
748
|
1 |
Yes |
instant_store |
|
804
|
1 |
Yes |
instant_count |