| line |
true |
false |
branch |
|
6369
|
5 |
2767 |
if ($strain =~ /\A (:?(?<strain>.*)_)? (?<gca>$Bio::MUST::Core::SeqId::NCBIGCA) \z/msx) { }
|
|
|
2711 |
56 |
elsif ($strain =~ /\A (:?(?<strain>.*)_)? (?<taxon_id>$Bio::MUST::Core::SeqId::NCBIPKEY) \z/msx) { }
|
|
6408
|
10 |
13224 |
if (defined $strain)
|
|
6420
|
128 |
13096 |
if (defined $gi)
|
|
6432
|
16 |
13080 |
if ($match)
|
|
6442
|
5 |
13075 |
if ($self->full_id =~ /~$Bio::MUST::Core::SeqId::NCBIGCA/msx)
|
|
6450
|
11053 |
2022 |
unless (defined $genus)
|
|
6461
|
10242 |
811 |
unless (defined $genus)
|
|
6469
|
29 |
2804 |
if (defined $family)
|
|
6471
|
3 |
26 |
if (defined $is_hyphenated{$hyphenated})
|
|
6478
|
2763 |
70 |
if (defined $strain)
|
|
6480
|
1 |
2762 |
if (defined $is_underscored{$underscored})
|
|
6496
|
2762 |
71 |
if defined $strain
|
|
6497
|
2436 |
397 |
if $acc =~ /$Bio::MUST::Core::SeqId::PKEYONLY/msx
|
|
6500
|
6 |
2827 |
if $new
|
|
6582
|
180 |
843 |
if $self->is_foreign
|
|
6672
|
24 |
0 |
$species ? :
|
|
|
4 |
4 |
$keep_strain ? :
|
|
|
8 |
16 |
$strain ? :
|
|
|
22 |
2 |
$taxon_id ? :
|
|
|
8 |
16 |
$accession ? :
|
|
6697
|
8 |
16 |
if $strain
|
|
6712
|
2 |
27 |
if $org =~ /\b cf \.? \s+ \D+ \s+/gimsx
|