| line |
true |
false |
branch |
|
127
|
1 |
57 |
if $ali->can("lookup")
|
|
133
|
4 |
54 |
$reorder ? :
|
|
140
|
3 |
55 |
if (defined $lookup) { }
|
|
147
|
1 |
2 |
unless $reorder
|
|
158
|
4469 |
67 |
unless $self->is_listed($seq->full_id)
|
|
161
|
8 |
59 |
if ($reorder)
|
|
175
|
2 |
53 |
if $reorder
|
|
205
|
2 |
10 |
if $line =~ /$Bio::MUST::Core::IdList::EMPTY_LINE/ or $list->is_comment($line)
|
|
235
|
2 |
6 |
if $line =~ /$Bio::MUST::Core::IdList::EMPTY_LINE/ or $list->is_comment($line)
|
|
239
|
1 |
5 |
if (not defined $count and $line =~ /$Bio::MUST::Core::IdList::COUNT_LINE/)
|
|
249
|
0 |
1 |
unless $list->count_ids == $count
|