| blib/lib/Bio/MUST/Apps/FortyTwo/OrgProcessor.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 0 | 64 | 0.0 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 124 | 0 | 0 | 0 | $query_seqs->type eq "prot" and $blastdb->type eq "nucl" |
| 179 | 0 | 0 | 0 | $homologous_seqs->type eq "nucl" and $blastdb->type eq "prot" |
| 238 | 0 | 0 | 0 | $orthologous_seqs->type eq "nucl" and $blastdb->type eq "prot" |
| 274 | 0 | 0 | 0 | $orthologous_seqs->type eq "nucl" and $blastdb->type eq "prot" |
| 329 | 0 | 0 | 0 | $orthologous_seqs->type eq "nucl" and $blastdb->type eq "prot" |
| 477 | 0 | 0 | 0 | $rp->aligner_mode eq "exoblast" and $failure |
| 508 | 0 | 0 | 0 | $ap->query_seqs->type eq "nucl" and $blastdb->type eq "nucl" |
| 0 | 0 | 0 | $ap->query_seqs->type eq "nucl" and $blastdb->type eq "nucl" and $hsp->hit_strand == -1 | |
| 623 | 0 | 0 | 0 | not defined $end and defined $start |
| 0 | 0 | 0 | not defined $end and defined $start and $start =~ /\A \+\d+ \z/msx | |
| 777 | 0 | 0 | 0 | $self->_tax_filter and $rp->tol_check eq "off" |
| line | l | !l | condition |
|---|---|---|---|
| 112 | 0 | 0 | $rp->blast_args_for("homologues") // {} |
| 169 | 0 | 0 | $rp->blast_args_for("orthologues") // {} |
| 233 | 0 | 0 | $rp->blast_args_for("templates") // {} |
| 269 | 0 | 0 | $rp->blast_args_for("templates") // {} |
| 323 | 0 | 0 | $rp->blast_args_for("templates") // {} |
| 637 | 0 | 0 | $self->para_score_for($transcript_acc) // 0 |
| 646 | 0 | 0 | $self->tol_score_for($transcript_acc) // 0 |
| 663 | 0 | 0 | $template_ids[0]->family // "" |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 477 | 0 | 0 | 0 | $rp->aligner_mode eq "blast" or $rp->aligner_mode eq "exoblast" and $failure |
| 683 | 0 | 0 | 0 | $rp->tax_reports eq "on" or $self->_tax_filter |
| 739 | 0 | 0 | 0 | $best_score ||= $score |
| 783 | 0 | 0 | 0 | $_ // () |
| 805 | 0 | 0 | 0 | $org =~ /$Bio::MUST::Apps::FortyTwo::OrgProcessor::PKEYONLY/ || $org =~ /$Bio::MUST::Apps::FortyTwo::OrgProcessor::GCAONLY/ |