| line |
count |
pod |
subroutine |
|
6
|
11 |
n/a |
BEGIN |
|
7
|
11 |
n/a |
BEGIN |
|
8
|
11 |
n/a |
BEGIN |
|
9
|
11 |
n/a |
BEGIN |
|
10
|
11 |
n/a |
BEGIN |
|
11
|
11 |
n/a |
BEGIN |
|
12
|
11 |
n/a |
BEGIN |
|
13
|
11 |
n/a |
BEGIN |
|
35
|
6 |
n/a |
_build__blast_db_location |
|
41
|
6 |
n/a |
_build__blast_db_location_obj |
|
48
|
0 |
n/a |
_build__sequence_handle |
|
54
|
0 |
No |
sequence_filename_root |
|
60
|
2 |
Yes |
found_sequence_names |
|
67
|
0 |
Yes |
found_non_matching_sequence_names |
|
75
|
6 |
n/a |
_word_sizes_for_given_allele_file |
|
85
|
0 |
n/a |
_get_word_size_from_blast_hit |
|
102
|
6 |
n/a |
_build_matching_sequences |
|
187
|
0 |
n/a |
_translate_contamination_names_into_sequence_types |
|
211
|
0 |
n/a |
_get_blast_hit_sequence |
|
232
|
0 |
n/a |
_get_base_filename |
|
239
|
0 |
n/a |
_pad_out_sequence |
|
256
|
0 |
n/a |
_build__absent_loci |
|
275
|
11 |
n/a |
BEGIN |