| line |
true |
false |
branch |
|
89
|
0 |
0 |
if (defined $blast_hit->{'allele_name'}) { }
|
|
124
|
0 |
0 |
unless (%top_blast_hit)
|
|
128
|
0 |
0 |
if exists $absent_loci_type{$allele}
|
|
134
|
0 |
0 |
unless (%top_blast_hit)
|
|
141
|
0 |
0 |
if (defined $top_blast_hit{'contamination'})
|
|
147
|
0 |
0 |
$_->{'percentage_identity'} == 100 ? :
|
|
155
|
0 |
0 |
if ($top_blast_hit{'percentage_identity'} == 100) { }
|
|
169
|
0 |
0 |
if (%matching_sequence_names and %missing_locus_names)
|
|
179
|
0 |
0 |
if %non_matching_sequence_names
|
|
192
|
0 |
0 |
if $main_allele_name eq $allele_number
|
|
199
|
0 |
0 |
if (defined $st->sequence_type)
|
|
215
|
0 |
0 |
if $input_sequence_obj->id ne $contig_name
|
|
217
|
0 |
0 |
if ($reverse_complement)
|
|
240
|
0 |
0 |
if length $input_sequence == $length_of_main_sequence
|
|
241
|
0 |
0 |
if (length $input_sequence > $length_of_main_sequence)
|
|
245
|
0 |
0 |
if $input_sequence eq 'U'
|
|
264
|
0 |
0 |
if ($seq->length == 0)
|