lib/Bio/Kmer.pm | |||
---|---|---|---|
Criterion | Covered | Total | % |
condition | 0 | 25 | 0.0 |
line | !l | l&&!r | l&&r | condition |
---|---|---|---|---|
166 | 0 | 0 | 0 | ref $seqfile and $seqfile->isa('Bio::SeqIO') |
line | l | !l | condition |
---|---|---|---|
155 | 0 | 0 | $settings->{'kmerlength'} || $settings->{'k'} || 21 |
156 | 0 | 0 | $settings->{'numcpus'} ||= 1 |
157 | 0 | 0 | $settings->{'gt'} ||= 1 |
158 | 0 | 0 | $settings->{'kmercounter'} ||= 'perl' |
161 | 0 | 0 | $settings->{'verbose'} ||= 0 |
349 | 0 | 0 | $$kmers{uc $query} || 0 |
414 | 0 | 0 | $_ ||= 0 |
434 | 0 | 0 | $hist{$_} || 0 |
line | l | !l&&r | !l&&!r | condition |
---|---|---|---|---|
159 | 0 | 0 | 0 | $settings->{'tempdir'} ||= tempdir('Kmer.pm.XXXXXX', 'TMPDIR', 1, 'CLEANUP', 1) |
179 | 0 | 0 | 0 | $seq->qual || 'I' x $seq->length |