| line |
!l |
l&&!r |
l&&r |
condition |
|
344
|
2 |
0 |
1 |
$$self{'dirty'} and $$self{'write'}
|
|
474
|
0 |
0 |
0 |
$scaled_value == 0 and (my $span = $self->span) > 1
|
|
502
|
0 |
0 |
0 |
@_ == 2 and ref $_[1] eq 'ARRAY'
|
|
511
|
4 |
0 |
0 |
ref $_[0] and ref $_[0] eq 'ARRAY'
|
|
590
|
57 |
2775 |
0 |
defined $last_val and $last_val != $v
|
|
656
|
4 |
0 |
0 |
$length / $samples > 100 and $step == 1
|
|
715
|
4 |
0 |
0 |
defined $self->window and $self->window > 1
|
|
869
|
3809 |
0 |
0 |
ref $values and ref $values eq 'ARRAY'
|
|
892
|
0 |
0 |
4 |
ref $values and ref $values eq 'ARRAY'
|
| line |
l |
!l |
condition |
|
239
|
2 |
0 |
$path ||= ''
|
|
245
|
0 |
0 |
$path || 'temporary file'
|
|
247
|
1 |
1 |
$options ||= {}
|
|
254
|
1 |
1 |
eval {
do {
$self->_readoptions
}
} || {}
|
|
258
|
0 |
2 |
$merged_options{'version'} ||= 0
|
|
259
|
2 |
0 |
$merged_options{'seqid'} ||= 'chrUnknown'
|
|
260
|
2 |
0 |
$merged_options{'min'} ||= 0
|
|
261
|
2 |
0 |
$merged_options{'max'} ||= 255
|
|
262
|
2 |
0 |
$merged_options{'mean'} ||= 128
|
|
263
|
2 |
0 |
$merged_options{'stdev'} ||= 255
|
|
264
|
1 |
1 |
$merged_options{'trim'} ||= 'none'
|
|
265
|
2 |
0 |
$merged_options{'step'} ||= 1
|
|
266
|
0 |
2 |
$merged_options{'start'} ||= 0
|
|
337
|
0 |
0 |
$$self{'smoothing'} || 'mean'
|
|
418
|
1 |
0 |
shift() || 1
|
|
556
|
1 |
0 |
$start ||= 1
|
|
624
|
0 |
0 |
eval {
do {
$self->_readoptions
}
} || {}
|
|
905
|
2 |
0 |
$max - $min || 0.001
|
| line |
l |
!l&&r |
!l&&!r |
condition |
|
249
|
0 |
2 |
0 |
ref $class || $class
|
|
267
|
2 |
0 |
0 |
$merged_options{'span'} ||= $merged_options{'step'}
|
|
309
|
1 |
1 |
0 |
$option eq 'min' or $option eq 'max'
|
|
457
|
0 |
0 |
0 |
not exists $$self{'end'} or $$self{'end'} < $end
|
|
464
|
1 |
3808 |
0 |
not exists $$self{'end'} or $$self{'end'} < $position
|
|
557
|
1 |
0 |
0 |
$end ||= $self->end
|
|
632
|
0 |
0 |
0 |
not defined $$self{'end'} or $$self{'end'} < $end
|
|
650
|
0 |
4 |
0 |
$samples ||= $length
|
|
676
|
0 |
0 |
0 |
not defined $max or $max < $_
|
|
781
|
0 |
0 |
0 |
$window ||= $self->window
|
|
783
|
0 |
0 |
0 |
$smoothing eq 'none' or $window < 2
|
|
823
|
0 |
0 |
0 |
not defined $max or $max < $v
|
|
833
|
0 |
0 |
0 |
not defined $min or $min > $v
|
|
859
|
0 |
0 |
0 |
not exists $$self{'end'} or $$self{'end'} < $new_end
|