| line |
true |
false |
branch |
|
48
|
0 |
0 |
if (defined $ad_idx) { }
|
|
|
0 |
0 |
elsif (defined $ao_idx and defined $ro_idx) { }
|
|
65
|
0 |
0 |
unless defined $ploidy
|
|
71
|
0 |
0 |
index($g_raw, ':') >= 0 ? :
|
|
75
|
0 |
0 |
if @h == 1 and $h[0] eq '.'
|
|
76
|
0 |
0 |
if @h != $ploidy
|
|
87
|
3 |
0 |
$idx >= 0 ? :
|
|
90
|
6 |
0 |
if $g_split[$i] ne '.'
|
|
92
|
0 |
3 |
if ($idx < 0) { }
|
|
111
|
0 |
0 |
if (defined $ra{$alleles->[$idx]}) { }
|
|
123
|
0 |
0 |
index($_, ':') >= 0 ? :
|
|
131
|
0 |
0 |
unless $smp_idcs and @$smp_idcs
|
|
146
|
0 |
0 |
unless $smp_idcs and @$smp_idcs
|
|
151
|
0 |
0 |
if (index($fields[$gt_idx], '.') >= 0) { }
|
|
174
|
0 |
0 |
if &uniq(@called_alleles) > 1
|
|
183
|
0 |
0 |
unless @valid_gt
|
|
184
|
0 |
0 |
&uniq(@valid_gt) == 1 ? :
|
|
190
|
0 |
0 |
unless @valid_gt
|
|
201
|
0 |
0 |
if (index($g, '.') >= 0)
|
|
206
|
0 |
0 |
if (&uniq(@called_alleles) > 1) { }
|
|
233
|
0 |
0 |
if $cnt->{$_} == $cnt_major
|