| line |
true |
false |
branch |
|
50
|
1 |
1 |
if $self->mode eq '<'
|
|
60
|
0 |
4 |
if not $l or $l =~ /^\s*$/
|
|
62
|
1 |
3 |
if ($l =~ /^##gff-version\s+(\d+)/) { }
|
|
|
1 |
2 |
elsif ($l =~ /$SEQ_REGION_RE/) { }
|
|
|
0 |
2 |
elsif ($l =~ /^\#\#(feature-ontology)\s+(.*)$/) { }
|
|
|
0 |
2 |
elsif ($l =~ /^\#\#(attribute-ontology)\s+(.*)$/) { }
|
|
|
0 |
2 |
elsif ($l =~ /^\#\#(source-ontology)\s+(.*)$/) { }
|
|
|
0 |
2 |
elsif ($l =~ /^\#\#(species)\s+(.*)$/) { }
|
|
|
0 |
2 |
elsif ($l =~ /^\#\#(genome-build)\s+(.*)$/) { }
|
|
|
0 |
2 |
elsif ($l =~ /^(\#\#\#)/) { }
|
|
|
0 |
2 |
elsif ($l =~ /^(\#\#FASTA)/) { }
|
|
|
0 |
2 |
elsif ($l =~ /$FASTA_RE/) { }
|
|
63
|
0 |
1 |
if $1 != 3
|
|
90
|
1 |
3 |
unless $l =~ /^\#/
|
|
101
|
0 |
1 |
if $self->no_header
|
|
129
|
0 |
1265 |
if ($l =~ /^\#/)
|
|
132
|
2 |
1263 |
if ($l =~ /$FASTA_RE/)
|
|
147
|
1 |
76 |
if ($l =~ /$SEQ_REGION_RE/) { }
|
|
|
0 |
76 |
elsif ($l =~ /^\#\#\#/) { }
|
|
|
16 |
60 |
elsif ($l =~ /^\#/ or $l =~ /^\s*$/ or $l =~ m[^//]) { }
|
|
|
3 |
57 |
elsif ($l =~ /$FASTA_RE/) { }
|
|
161
|
1 |
57 |
unless $l
|
|
175
|
0 |
0 |
if ($l =~ /$SEQ_REGION_RE/) { }
|
|
|
0 |
0 |
elsif ($l =~ /^\#\#\#/) { }
|
|
|
0 |
0 |
elsif ($l =~ /^\#/ or $l =~ /^\s*$/ or $l =~ m[^//]) { }
|
|
|
0 |
0 |
elsif ($l =~ /$FASTA_RE/) { }
|
|
189
|
0 |
0 |
unless $l
|
|
198
|
0 |
141 |
unless $self->_wrote_sth_before
|
|
202
|
0 |
141 |
unless &blessed($f) eq 'Bio::Gonzales::Feat'
|
|
215
|
1 |
2 |
unless $self->_wrote_sth_before
|
|
236
|
114 |
0 |
if (defined $value) { }
|
|
241
|
0 |
0 |
unless $self->quiet
|
|
252
|
0 |
57 |
unless @d == 9
|
|
255
|
0 |
57 |
if (ref $self->preprocess eq 'CODE')
|
|
261
|
9 |
48 |
if ($d[6] eq '-') { }
|
|
|
38 |
10 |
elsif ($d[6] eq '+') { }
|
|
267
|
412 |
101 |
unless $d[$i] eq '.'
|
|
283
|
0 |
0 |
if $sub
|