| blib/lib/Bio/FeatureIO/gff.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| condition | 23 | 80 | 28.7 |
| line | !l | l&&!r | l&&r | condition |
|---|---|---|---|---|
| 116 | 0 | 7 | 12 | $directive = $self->_readline and $directive =~ /^##/ |
| 152 | 0 | 0 | 68 | $gff_string = $self->_readline and defined $gff_string |
| 223 | 0 | 5 | 30 | $self->{'group_not_done'} and $feat = $self->next_feature |
| 5 | 0 | 30 | $self->{'group_not_done'} and $feat = $self->next_feature and defined $feat | |
| 326 | 84 | 0 | 7 | $val and $val == 1 |
| 362 | 0 | 0 | 1 | defined $k and defined $v |
| 422 | 0 | 0 | 7 | defined $val and $valid{$val} |
| 486 | 0 | 0 | 1 | $arg[1] and $arg[2] |
| 591 | 0 | 0 | 0 | defined $region and $start < $region->start |
| 658 | 0 | 0 | 71 | $db and $accession |
| 720 | 3 | 0 | 0 | $strand and $strand eq '+' |
| 3 | 0 | 0 | $strand and $strand eq '-' | |
| 741 | 11 | 0 | 0 | $self->{'allIDs'}{do { $attr{'ID'} }->[0]} and $self->validate |
| line | l | !l | condition |
|---|---|---|---|
| 108 | 0 | 7 | $arg{'-version'} || 3 |
| 109 | 0 | 7 | $arg{'-validate_terms'} || 0 |
| 885 | 0 | 0 | $feature->start || '.' |
| 886 | 0 | 0 | $feature->end || '.' |
| 919 | 0 | 0 | $feature->source || 'unknownsource' |
| 924 | 0 | 0 | $feature->start || '.' |
| 925 | 0 | 0 | $feature->end || '.' |
| line | l | !l&&r | !l&&!r | condition |
|---|---|---|---|---|
| 474 | 5 | 0 | 3 | $directive eq 'FASTA' or $directive =~ /^>/ |
| 591 | 0 | 0 | 0 | defined $region and $start < $region->start or $end > $region->end |
| 653 | 8 | 0 | 49 | $attr{'Dbxref'} or $attr{'dbxref'} |
| 710 | 0 | 0 | 3 | not $tend or $extra |
| 876 | 0 | 0 | 0 | $transcript_id ||= $group |
| 877 | 0 | 0 | 0 | $gene_id ||= $group |
| 892 | 0 | 0 | 0 | $type eq 'EXON' or $type eq 'CDS' |
| 0 | 0 | 0 | $type eq 'EXON' or $type eq 'CDS' or $type eq 'start_codon' | |
| 0 | 0 | 0 | $type eq 'EXON' or $type eq 'CDS' or $type eq 'start_codon' or $type eq 'stop_codon' |