| blib/lib/Bio/FdrFet.pm | |||
|---|---|---|---|
| Criterion | Covered | Total | % |
| subroutine | 22 | 30 | 73.3 |
| pod | n/a | ||
| line | count | pod | subroutine |
|---|---|---|---|
| 3 | 1 | n/a | BEGIN |
| 4 | 1 | n/a | BEGIN |
| 5 | 1 | n/a | BEGIN |
| 6 | 1 | n/a | BEGIN |
| 153 | 1 | n/a | new |
| 185 | 2 | n/a | fdr_cutoff |
| 204 | 1 | n/a | verbose |
| 246 | 1 | n/a | universe |
| 283 | 1345 | n/a | add_to_pathway |
| 318 | 11349 | n/a | add_to_genes |
| 339 | 1 | n/a | genes |
| 355 | 1 | n/a | pathways |
| 390 | 0 | n/a | pathway_result |
| 425 | 0 | n/a | pathway_desc |
| 437 | 0 | n/a | pathway_genes |
| 451 | 0 | n/a | fdr_position |
| 473 | 0 | n/a | gene_count |
| 493 | 1 | n/a | calculate |
| 506 | 2 | n/a | _check_fdr_cutoff |
| 522 | 12694 | n/a | _check_args |
| 541 | 0 | n/a | _check_pathway_arg |
| 550 | 2 | n/a | _sort_by_pvals |
| 563 | 1 | n/a | _calc_fdrs |
| 575 | 35 | n/a | _fdr |
| 585 | 1 | n/a | _clean_genes |
| 629 | 1 | n/a | _clean_unused_genes |
| 658 | 1 | n/a | _calculate_fets |
| 751 | 0 | n/a | log10 |
| 756 | 0 | n/a | _complete_all_results_array |
| 766 | 1 | n/a | BEGIN |