Subroutine Coverage
| blib/lib/Bio/FastParsers/Blast/Xml/Hsp.pm |
|
| Criterion |
Covered |
Total |
% |
| subroutine |
30 |
41 |
73.1
|
| pod |
37 |
37 |
100.0
|
| line |
count |
pod |
subroutine |
|
4
|
7 |
n/a |
BEGIN |
|
5
|
7 |
n/a |
BEGIN |
|
9
|
7 |
n/a |
BEGIN |
|
38
|
2 |
Yes |
align_len |
|
43
|
0 |
Yes |
bit_score |
|
48
|
0 |
Yes |
density |
|
53
|
0 |
Yes |
evalue |
|
58
|
0 |
Yes |
gaps |
|
63
|
2 |
Yes |
hit_frame |
|
68
|
2424 |
Yes |
hit_from |
|
73
|
1861 |
Yes |
hit_to |
|
78
|
0 |
Yes |
hseq |
|
83
|
56 |
Yes |
identity |
|
88
|
40 |
Yes |
midline |
|
93
|
203 |
Yes |
num |
|
98
|
0 |
Yes |
pattern_from |
|
103
|
0 |
Yes |
pattern_to |
|
108
|
564 |
Yes |
positive |
|
113
|
0 |
Yes |
qseq |
|
118
|
2 |
Yes |
query_frame |
|
123
|
1861 |
Yes |
query_from |
|
128
|
1861 |
Yes |
query_to |
|
133
|
258 |
Yes |
score |
|
142
|
0 |
Yes |
expect |
|
147
|
1 |
Yes |
qcov |
|
152
|
0 |
Yes |
scov |
|
157
|
1 |
Yes |
pident |
|
162
|
0 |
Yes |
ppos |
|
168
|
2 |
Yes |
query_len |
|
174
|
2 |
Yes |
hit_len |
|
179
|
7 |
n/a |
BEGIN |
|
184
|
1 |
Yes |
hit_strand |
|
190
|
620 |
Yes |
hit_start |
|
197
|
620 |
Yes |
hit_end |
|
204
|
1 |
Yes |
query_strand |
|
210
|
620 |
Yes |
query_start |
|
217
|
620 |
Yes |
query_end |
|
224
|
1 |
Yes |
query_coverage |
|
232
|
1 |
Yes |
subject_coverage |
|
240
|
1 |
Yes |
percentage_identity |
|
246
|
1 |
Yes |
percentage_positive |